PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000985.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NF-YC | ||||||||
Protein Properties | Length: 113aa MW: 12153.2 Da PI: 9.8978 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 108.4 | 4.3e-34 | 18 | 101 | 18 | 100 |
NF-YC 18 nhelPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 h+lPlarikki+k + dvkmis eaP+++skacelfi elt r+w a + krrtl+k d+a+av td+fdflv+ v d+ Itr_sc000985.1_g00002.1 18 PHSLPLARIKKIMKkSSSDVKMISGEAPIVFSKACELFIEELTKRAWTVAMQGKRRTLHKEDVASAVIATDVFDFLVNLVSDDQ 101 599**********72578************************************************************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.6E-31 | 15 | 84 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.14E-27 | 16 | 93 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-22 | 20 | 84 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MRQAGAFSGM LAGGKTGPHS LPLARIKKIM KKSSSDVKMI SGEAPIVFSK ACELFIEELT 60 KRAWTVAMQG KRRTLHKEDV ASAVIATDVF DFLVNLVSDD QSANSVCVPG LSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-32 | 19 | 97 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628926.1 | 2e-61 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_016485723.1 | 2e-61 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q9SMP0 | 2e-31 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A1S4BA97 | 5e-60 | A0A1S4BA97_TOBAC; nuclear transcription factor Y subunit C-2-like | ||||
STRING | XP_009628926.1 | 8e-61 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12881 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 7e-34 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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