PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000984.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 560aa    MW: 62870.2 Da    PI: 6.1831
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000984.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.42.4e-82794071343
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lLl +A av++++l+ a a L++l +++s  gd++qR+ ayf+ AL arl+ + s  y+++   +t+    +ee+ a++ +++
  Itr_sc000984.1_g00005.1  79 LIHLLLVAAAAVNDNNLTSAMANLSELCQNVSVLGDAIQRVSAYFAAALTARLLTQKSPFYHTIMKPPTP----QEEFLAFTNLYK 160
                              689***********************************************************99888886....688889999*** PP

                     GRAS  87 vsPilkfshltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger 164
                              vsP+ +f+h+taNqaI ea+e+e          +H+iDfdis+G+QWp+L+q+L++   +  slRiTg++       +el+et+ r
  Itr_sc000984.1_g00005.1 161 VSPLCQFAHFTANQAIIEAFENEsqtnnnsnASLHVIDFDISYGFQWPSLIQSLSQTLLNRVSLRITGFAT----TLNELKETEAR 242
                              *********************9987777766678*************************************....99********* PP

                     GRAS 165 LakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh. 248
                              L +fA+++ +++fef+ l    l+  +l ++ ++++E++aVnl++++ rll      +++++e+Lk+v+sl+P +v+vve+++ + 
  Itr_sc000984.1_g00005.1 243 LLSFAKSFrNLSFEFHGL----LKGSHLGNIVTRENETTAVNLSFHVNRLL------TDNISETLKAVRSLRPSIVTVVEHDVCRk 318
                              *******857*******8....77778899********************9......223568*******************7775 PP

                     GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                 sFl rf+e+l+y++a+fdsl+  lp es+er ++E++ lgrei++v     ++    he  e  r  le++GF +++ls+k++
  Itr_sc000984.1_g00005.1 319 LPRSFLPRFMESLHYFAAMFDSLDDCLPIESHERLSIENH-LGREIKSVMNFDDQR----HE-SEIGRGVLENCGFCEMELSSKNV 398
                              889*************************************.******998877665....77.7888******************* PP

                     GRAS 335 kqaklllrk 343
                              +qaklll+ 
  Itr_sc000984.1_g00005.1 399 MQAKLLLKI 407
                              ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.56653418IPR005202Transcription factor GRAS
PfamPF035148.2E-8079407IPR005202Transcription factor GRAS
SuperFamilySSF498791.63E-9510553IPR008984SMAD/FHA domain
Gene3DG3DSA:2.60.200.202.1E-8510553IPR000253Forkhead-associated (FHA) domain
PROSITE profilePS5000610.571513560IPR000253Forkhead-associated (FHA) domain
PfamPF004984.3E-8514553IPR000253Forkhead-associated (FHA) domain
CDDcd000606.54E-5514553No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MESIDDEDEF LSLKLAIATQ QPLGHERNKK RKRSREDLVD ILSYEEEVYS LLQIGEQMLN  60
STHKTSKESV GEGQEGLHLI HLLLVAAAAV NDNNLTSAMA NLSELCQNVS VLGDAIQRVS  120
AYFAAALTAR LLTQKSPFYH TIMKPPTPQE EFLAFTNLYK VSPLCQFAHF TANQAIIEAF  180
ENESQTNNNS NASLHVIDFD ISYGFQWPSL IQSLSQTLLN RVSLRITGFA TTLNELKETE  240
ARLLSFAKSF RNLSFEFHGL LKGSHLGNIV TRENETTAVN LSFHVNRLLT DNISETLKAV  300
RSLRPSIVTV VEHDVCRKLP RSFLPRFMES LHYFAAMFDS LDDCLPIESH ERLSIENHLG  360
REIKSVMNFD DQRHESEIGR GVLENCGFCE MELSSKNVMQ AKLLLKIRSH SPSPSSDSSC  420
SSSCVNGGFR VVERDDGKAS HNPSLRSLFS LSALHSTVEK QEEPRGELMS ARAEERKIPV  480
FTVLKNNAIL KNIFLLDNAA FSEESEKELE EILVVGRHPE CNITLEHPSI SRFHLRIHSK  540
PSSQSLSVID LSSGIHFLSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-497440714348Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833KKRKRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180323.10.0PREDICTED: scarecrow-like protein 23
TrEMBLA0A2G2WY351e-162A0A2G2WY35_CAPBA; Uncharacterized protein
TrEMBLA0A498JYY71e-162A0A498JYY7_MALDO; Uncharacterized protein
STRINGXP_008381008.11e-163(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123541823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.13e-52GRAS family protein