PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000983.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 1029aa    MW: 113326 Da    PI: 4.9315
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000983.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.2e-193783148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Itr_sc000983.1_g00003.1 37 KGQWTPEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                             799****************************9.************986 PP
2Myb_DNA-binding66.54.6e-2189135148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g+W++eEde+++d+v+++G++ W+tIa++++ gR +kqc++rw+++l
  Itr_sc000983.1_g00003.1  89 KGPWSKEEDEIIIDLVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                              79******************************.*************97 PP
3Myb_DNA-binding48.22.5e-15141183145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  Itr_sc000983.1_g00003.1 141 KEAWTQEEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 183
                              579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4713283IPR017930Myb domain
SMARTSM007171.0E-153685IPR001005SANT/Myb domain
PfamPF002492.1E-163783IPR001005SANT/Myb domain
SuperFamilySSF466896.96E-163893IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-2539100IPR009057Homeodomain-like
CDDcd001672.05E-144083No hitNo description
PROSITE profilePS5129433.55784139IPR017930Myb domain
SuperFamilySSF466891.05E-3186182IPR009057Homeodomain-like
SMARTSM007171.2E-1988137IPR001005SANT/Myb domain
PfamPF002494.2E-1989135IPR001005SANT/Myb domain
CDDcd001672.93E-1791135No hitNo description
Gene3DG3DSA:1.10.10.609.3E-28101142IPR009057Homeodomain-like
PROSITE profilePS5129419.513140190IPR017930Myb domain
SMARTSM007176.3E-15140188IPR001005SANT/Myb domain
PfamPF002492.1E-13141184IPR001005SANT/Myb domain
CDDcd001671.19E-11143183No hitNo description
Gene3DG3DSA:1.10.10.601.2E-21143190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1029 aa     Download sequence    Send to blast
MESDRTSATP TDGISNSLQR VRPLHGRTSG PTRRSTKGQW TPEEDEILRK AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IDLVNKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPSIN KEAWTQEEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLS QFPALPNVNS ANQILPTTSS KFQQSSEDRS VCREGKEVDE  240
VSECSQGSAL VGCSQSTSDR GNTFVHTREE RGVKDESSHE KDPSLSSATC SKNFNTFHEV  300
ACSMPEIPND LNDTSQFIEQ TIAHEIGASI TRDGHLNPDD IPNMSALDLM QVQAGFFMQF  360
LNSCDSHGVP PLQTAMDLGT ISHMGSIAVG SDNQDDMFNL EDGHCGIIYT GPENHQCFPS  420
GNGIRGVEES ADSVILQPSN YQIPEAGMLA PQSCNTISSD NSGPSSYQAF SVPIMFGVDS  480
DQLIENPRQE IITCGDFVYA SEPGSSTCGN RMDGQGVSTC NGMDDQGLKD QMDQYIQENE  540
CVKLVPANDF GPVQPDSVQT CSVHEQNIVK DEKRDPGTLC YEPPRFPSLD VPFFSCDLIQ  600
SGTDMQQEYS PLGIRQLMMS SMNCLTPFRL WDSPSRDSSP DAVLKSAAKT FTCTPSILKK  660
RHRDLVSPLS EKRSEKKLES DIKHEFSDLA RNFSRLEVMV GDAGNEKATR SSPLPNQEFI  720
SESSIEDKEN LNPEFEGTTK EGMEGTRFSG RRDLGRESNK GDADDTIQVK RTVGVLVERG  780
KDDPLFFSPD RFGSKSDRAV TQTTKVLGNS CLNRLETAPN QGTVSSSSEA PCLSVCSPRI  840
CAIKEGNNLV VATSVQSVPA SENAGEGSGN GVGLDNNISI FGETPFKRSI ESPSAWKSPW  900
FINSFLSSPR VDTEITLEDF GFLFSPGDRS YDAIGLMKQL SEQTAATFAD AQEVLGGETP  960
ESILRGRCSK NQKADENTSQ FTSNVLTERR MLDFSECGTP GKKAESGKFP GGSSSSISSP  1020
SSYLLKECR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-70371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-70371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197132.10.0PREDICTED: myb-related protein 3R-1
TrEMBLA0A484NBM10.0A0A484NBM1_9ASTE; Uncharacterized protein
STRINGXP_009782666.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein