PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000975.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 335aa    MW: 37420.6 Da    PI: 7.6266
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000975.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-151466148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                             rg W++eEde+l++++  +G g+W+t ++        + R++k+c++rw +yl
  Itr_sc000975.1_g00005.1 14 RGLWSPEEDEKLINYISNYGHGCWSTLPKLADlsragLQRCGKSCRLRWINYL 66
                             788************************************************97 PP
2Myb_DNA-binding49.31.1e-1572114145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              rg+++++E  l++++++ lG++ W+ Ia++++ gRt++++k++w+
  Itr_sc000975.1_g00005.1  72 RGSFSPQEAALIIELHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 114
                              899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-25669IPR009057Homeodomain-like
PROSITE profilePS5129414.684966IPR017930Myb domain
SuperFamilySSF466892.25E-2811113IPR009057Homeodomain-like
SMARTSM007177.9E-111368IPR001005SANT/Myb domain
PfamPF002493.9E-131466IPR001005SANT/Myb domain
CDDcd001678.47E-101766No hitNo description
PROSITE profilePS5129425.38467121IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2570122IPR009057Homeodomain-like
SMARTSM007177.7E-1671119IPR001005SANT/Myb domain
PfamPF002491.7E-1472115IPR001005SANT/Myb domain
CDDcd001679.76E-1274114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGHHNCCNKQ KVKRGLWSPE EDEKLINYIS NYGHGCWSTL PKLADLSRAG LQRCGKSCRL  60
RWINYLRPDL KRGSFSPQEA ALIIELHRIL GNRWAQIAKH LPGRTDNEVK NFWNSSIKKK  120
LISHGGRLSH LPSSPAPILS NVSNPNFQTF FSQLPSSNNP NFIQNNNSAI LNVPAQLQAG  180
DEMNNLVFPV MPSVPLPQLE TTTSIDPTWF LGYPQSQNLV LDPQHYQISS YNNNNFDNEM  240
MVPLLHHEDE PIIIPKLLPG NLVLSSSSLS SGIAQQDDFI VPNPIPYSHH DLQIPSYEIM  300
LPPMPALSLS SSSSSSSFSA VPCSQLLMNP STWVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31141217108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196414.11e-147PREDICTED: transcription factor MYB26-like
TrEMBLA0A068TNT32e-85A0A068TNT3_COFCA; Uncharacterized protein
STRINGXP_004486846.15e-84(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-77myb domain protein 26