PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000975.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 532aa MW: 56863.6 Da PI: 9.3364

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000975.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Itr_sc000975.1_g00001.1 99 FVCEICNKGFQRDQNLQLHRRGH 121 89*******************88 PP
2	zf-C2H2	13.3	0.00025	176	198	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Itr_sc000975.1_g00001.1 176 WKCEKCSKRYAVQSDWKAHSKTC 198 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	98	121	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.58E-7	98	121	No hit	No description
Pfam	PF12171	8.6E-5	99	121	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	99	121	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	99	121	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	101	121	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	141	171	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-4	164	197	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.58E-7	171	196	No hit	No description
SMART	SM00355	130	176	196	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MMMKGVMIHQ PNLQQSPALD NQENMSNVTS AASGEASVSS SNGGVYPHQQ HFFGGNTINN 60 QPQPQPQQIK KKRNQPGNPD PDSEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG 120 HNLPWKLKQR SSKDVVRKKV YVCPESSCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCEK 180 CSKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAINTGNN 240 NAFHHLNPQP RSSPAPLSNI SLHFQPPPPQ FAAPPSYSIK KEQTNSSAAL AGFNLRPEIP 300 PWLLPCPSGG SPQPPPPAAA VDLTPSIFQE FGGAGLPGFH SAVGSPHISA TALLQKAAQM 360 GATMSGGTGK TGAGGGGPTT LVMSGPHLAH VSSDQPANNN SNADFGLNLS SRGAGGLLLD 420 GLASFGGKTT VSAAPPSASP APSPSFLQDM MNSFSSANNA PFEDPLFGSF LNNNKDAGAG 480 AGDDITKDFL GLRPLSRSDI FNITTGGQLV NSPADHHHHQ GGQSQKTWQQ QA

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MMMKGVMIHQ PNLQQSPALD NQENMSNVTS AASGEASVSS SNGGVYPHQQ HFFGGNTINN  60
QPQPQPQQIK KKRNQPGNPD PDSEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG  120
HNLPWKLKQR SSKDVVRKKV YVCPESSCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCEK  180
CSKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAINTGNN  240
NAFHHLNPQP RSSPAPLSNI SLHFQPPPPQ FAAPPSYSIK KEQTNSSAAL AGFNLRPEIP  300
PWLLPCPSGG SPQPPPPAAA VDLTPSIFQE FGGAGLPGFH SAVGSPHISA TALLQKAAQM  360
GATMSGGTGK TGAGGGGPTT LVMSGPHLAH VSSDQPANNN SNADFGLNLS SRGAGGLLLD  420
GLASFGGKTT VSAAPPSASP APSPSFLQDM MNSFSSANNA PFEDPLFGSF LNNNKDAGAG  480
AGDDITKDFL GLRPLSRSDI FNITTGGQLV NSPADHHHHQ GGQSQKTWQQ QA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-38	172	241	3	72	Zinc finger protein JACKDAW
5b3h_F	7e-38	172	241	3	72	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	138	KLKQRSSKDVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019196826.1	0.0	PREDICTED: protein indeterminate-domain 7-like isoform X1
Refseq	XP_019196827.1	0.0	PREDICTED: protein indeterminate-domain 7-like isoform X1
Refseq	XP_019196828.1	0.0	PREDICTED: protein indeterminate-domain 7-like isoform X1
Swissprot	Q8H1F5	1e-122	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A3Q7FXF1	0.0	A0A3Q7FXF1_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400006385	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-109	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]