PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000973.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 330aa MW: 38305.7 Da PI: 5.4899

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000973.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100.1	3.2e-31	15	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyWk 84 lppG+ F P d+e+ + yL +kv+g+ ++ +vi+e+diy+++P++Lp ++ ++ yfF+k+dkk+++gkr nr tk +g W+ Itr_sc000973.1_g00002.1 15 LPPGLIFAPFDKEIFKSYLLPKVKGEYFHP-QVIPEFDIYQCQPSQLP-GLDPKQVFSYFFTKTDKKHQNGKRLNRFTKdqKGHWR 98 79***********************999.89***********.444444566**************777679 PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 t k +e++++ +++++g k++Lv+ ++ +kt+W+mhey l Itr_sc000973.1_g00002.1 99 ITSKIQEITEEdGKTVIGRKNVLVYM---YENKVKTNWIMHEYML 140 ******95666799**98...455579******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-34	14	165	IPR003441	NAC domain
PROSITE profile	PS51005	36.539	15	166	IPR003441	NAC domain
Pfam	PF02365	6.0E-16	16	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MGDSVEEEPE WKKTLPPGLI FAPFDKEIFK SYLLPKVKGE YFHPQVIPEF DIYQCQPSQL 60 PGLDPKQVFS YFFTKTDKKH QNGKRLNRFT KDQKGHWRIT SKIQEITEED GKTVIGRKNV 120 LVYMYENKVK TNWIMHEYML DHNYANKNNK GDKLDTSVVV CRIYERKGKN NCENNSDESE 180 VIRDVEQKHK RGSSSSSSQS DDPGESSSRD KRSKRLCINN QTSLNSTPLD VQQPAATMMM 240 QTTYWEEQPL QPLSNHQLAS NNNGCYPFDA QLNSVPQQPA TYRDELQLPN FDPMKKLIPQ 300 PPKEPNLNVE EKQDDDDSDD FNFDTDSFFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-21	6	167	8	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-21	6	167	8	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-21	6	167	8	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-21	6	167	8	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-21	6	167	11	169	NAC domain-containing protein 19
3swm_B	2e-21	6	167	11	169	NAC domain-containing protein 19
3swm_C	2e-21	6	167	11	169	NAC domain-containing protein 19
3swm_D	2e-21	6	167	11	169	NAC domain-containing protein 19
3swp_A	2e-21	6	167	11	169	NAC domain-containing protein 19
3swp_B	2e-21	6	167	11	169	NAC domain-containing protein 19
3swp_C	2e-21	6	167	11	169	NAC domain-containing protein 19
3swp_D	2e-21	6	167	11	169	NAC domain-containing protein 19
4dul_A	1e-21	6	167	8	166	NAC domain-containing protein 19
4dul_B	1e-21	6	167	8	166	NAC domain-containing protein 19

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16162	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	2e-26	NAC domain containing protein 57