PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000967.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 231aa MW: 26245.5 Da PI: 8.8896

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000967.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.4	1.6e-20	4	65	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r++R+++t+eq+ +Lee+++k r p++++++ L+++l +++ ++V++WFqN++a+++k Itr_sc000967.1_g00007.1 4 RQSRWSPTPEQIMILEEMYQKgLRSPNTSQIQMLSAHLslygKIEGKNVYYWFQNHKARDRK 65 689***************99************************************97 PP
2	Wus_type_Homeobox	109.7	1.6e-35	5	66	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+PtpeQi+iLee+y++Glr+Pn+++iq ++a+L+ yGkie+kNV+yWFQN+kaR+r+k Itr_sc000967.1_g00007.1 5 QSRWSPTPEQIMILEEMYQKGLRSPNTSQIQMLSAHLSLYGKIEGKNVYYWFQNHKARDRKK 66 79**********************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.936	1	66	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.48E-13	2	68	IPR009057	Homeodomain-like
SMART	SM00389	2.5E-9	3	70	IPR001356	Homeobox domain
Pfam	PF00046	3.4E-18	4	65	IPR001356	Homeobox domain
CDD	cd00086	1.49E-7	4	63	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-9	6	66	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSSRQSRWSP TPEQIMILEE MYQKGLRSPN TSQIQMLSAH LSLYGKIEGK NVYYWFQNHK 60 ARDRKKLKKR LNKQVHHYHQ SFSGTTVDEL SPLHLHRPSF AQPHHHSHSS PQSQSYPSSS 120 AGYLLQATVV GEEEEEEDAF QLLPTPVNFH PRKMDLTRPQ HSDQTPATTT VETSSSSSCI 180 TRTTMDGRDC IFTMATGPTL PCCTTHHTPH TPLKTLQLFP TSSTKVKEGH L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	70	DRKKLKKRL
2	63	69	RKKLKKR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2959	19	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	1e-25	WOX family protein