PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000942.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 319aa MW: 35668.3 Da PI: 4.8801

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000942.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.6	2.7e-35	12	103	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 F++k+y++++d+++++li+w + +nsf+v+++ ef++k+Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F Itr_sc000942.1_g00003.1 12 FVMKTYQMVNDPRIDSLITWGRANNSFMVVEPLEFSEKILPAFFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFL 88 9******************999*************************************999.........***** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 +g+++ll++i r+k+ Itr_sc000942.1_g00003.1 89 RGQTHLLKNIVRRKN 103 **********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	4.35E-33	8	101	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.2E-50	8	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	5.3E-37	9	101	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.9E-17	12	35	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	9.6E-30	12	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.9E-17	50	62	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	51	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.9E-17	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MEPECNNTIA PFVMKTYQMV NDPRIDSLIT WGRANNSFMV VEPLEFSEKI LPAFFKHNNF 60 SSFVRQLNTY GFRKVDPDKW EFANEWFLRG QTHLLKNIVR RKNGRNLLHC KHGGGDEGDE 120 EEEMFSEIMR MKKEQKDLEE ELERMNRRLE ATERRPEQMM EFLCKVVEEP EILPRMMLVG 180 RERVARRISL GAAAAAGEKK MKLAAAASCP VKNEEEDGGS GVALGVNSSV HLYDAEFDVD 240 TLCQSSPENP LTAGWLSRSY NNCSAVSTTT SSSSLSSSES GGFTVATPLD VFSGYDCMGN 300 GTSAATAPPY PFSLLEGSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-23	7	101	24	129	Heat shock factor protein 1
5d5v_B	2e-23	7	101	24	129	Heat shock factor protein 1
5d5v_D	2e-23	7	101	24	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019171041.1	0.0	PREDICTED: heat stress transcription factor C-1-like
Swissprot	Q9LV52	9e-80	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	A0A1S4DH19	1e-108	A0A1S4DH19_TOBAC; heat stress transcription factor C-1-like
STRING	XP_009588171.1	1e-109	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6832	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	4e-66	heat shock transcription factor C1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]