PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000940.1_g00023.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 251aa    MW: 27011.9 Da    PI: 4.8811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000940.1_g00023.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-174796255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Itr_sc000940.1_g00023.1 47 SYVGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATPEMAARAHDVAALSIKG 96
                             79****998.**********854...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.54E-2946104No hitNo description
PfamPF008477.5E-124696IPR001471AP2/ERF domain
SMARTSM003806.8E-3447110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-3047105IPR001471AP2/ERF domain
PROSITE profilePS5103221.99747104IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-2047104IPR016177DNA-binding domain
PRINTSPR003671.0E-84859IPR001471AP2/ERF domain
PRINTSPR003671.0E-87086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAEPPFCNET ELSTSNSSCS PSSRCKRPRD DAGGGKSCKR SDLKHPSYVG VRMRAWGKWV  60
SEIREPKKKS RIWLGTFATP EMAARAHDVA ALSIKGDSAL LNFPSLAGLL PRPATSTPRD  120
VQAAAVKAAH MAHLDPPPKP PSSSAASLAS SPSSSSLVST VTSGEDASTP PQEDDENDAA  180
PPSPAELGEI VELPELRDNA EPTRDEFIFV DSYGWDFCHP WSHLDDGRYV AGDGFDAVLS  240
GDFDSCLWQH Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16441041172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019200257.11e-123PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ391271e-46TINY_ARATH; Ethylene-responsive transcription factor TINY
SwissprotQ9LYD32e-46DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A484MFR05e-90A0A484MFR0_9ASTE; Uncharacterized protein
STRINGXP_009782186.11e-65(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.12e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]