PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000924.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 623aa MW: 68964 Da PI: 9.4759

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000924.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	224	246	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F ++nL+ H ++ H Itr_sc000924.1_g00007.1 224 SCPVCGEIFMKPENLELHHSVrH 246 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	225	246	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.34E-22	248	452	No hit	No description
Gene3D	G3DSA:3.90.228.10	7.1E-15	249	450	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
CDD	cd09272	1.84E-42	486	588	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence Send to blast
MAKTKTKTSQ KHPKEKKLKT PKPQNHCEGK EVQKPHSWAV VRSLFTCKHL QAQIEQQQQQ 60 KQEEQQVQAE QPKVQSEKHN VQSKNSKLEP PPHHHLQQPI EESSKKCKKL KCSGSICSNT 120 KVMHRPELSS SSSPEEHKRK SPFSSCKNLN GSTRSMKVTL NDLNNINSAT ATANISAPTS 180 SPSIVGSFRA MPFRKLSGCY ECRMVVDPVL GMTRDPSLRT TISSCPVCGE IFMKPENLEL 240 HHSVRHAVSE LGPEDTSRNI VEIIFQSSWL KKDTPICKID RILKVHNTPR TISRFEEYRE 300 ATKAKANKQS KKHPRCIADG NELLRFHCTT FACSLGLNAS SNLCNSIPNC HVCGIIKNGF 360 KAAEDVGGGA GKGILTTATS GRAHDSARVV SSGDDNKRAM LVCRVIAGRV KKNMEGGLEE 420 YDSVAGAAGV YSNLDELYVF NHRAILPCFV TQKLKEATDS LLPALRQGGL TTVSFLVQPL 480 SLGNQRSKTV SRSSLEAEYQ ALAYAVCETQ WIAFLLKDLY AYMQQPATVF CDNKSAVAIA 540 ENHVFHERTK HIEIDCHLVL EKVSNGLVKL LSVFSLNQIA DGFTKPLPIT LFTNFISKLG 600 IQDLRHLMGV LENKAGRSNE GNS

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence Send to blast

MAKTKTKTSQ KHPKEKKLKT PKPQNHCEGK EVQKPHSWAV VRSLFTCKHL QAQIEQQQQQ  60
KQEEQQVQAE QPKVQSEKHN VQSKNSKLEP PPHHHLQQPI EESSKKCKKL KCSGSICSNT  120
KVMHRPELSS SSSPEEHKRK SPFSSCKNLN GSTRSMKVTL NDLNNINSAT ATANISAPTS  180
SPSIVGSFRA MPFRKLSGCY ECRMVVDPVL GMTRDPSLRT TISSCPVCGE IFMKPENLEL  240
HHSVRHAVSE LGPEDTSRNI VEIIFQSSWL KKDTPICKID RILKVHNTPR TISRFEEYRE  300
ATKAKANKQS KKHPRCIADG NELLRFHCTT FACSLGLNAS SNLCNSIPNC HVCGIIKNGF  360
KAAEDVGGGA GKGILTTATS GRAHDSARVV SSGDDNKRAM LVCRVIAGRV KKNMEGGLEE  420
YDSVAGAAGV YSNLDELYVF NHRAILPCFV TQKLKEATDS LLPALRQGGL TTVSFLVQPL  480
SLGNQRSKTV SRSSLEAEYQ ALAYAVCETQ WIAFLLKDLY AYMQQPATVF CDNKSAVAIA  540
ENHVFHERTK HIEIDCHLVL EKVSNGLVKL LSVFSLNQIA DGFTKPLPIT LFTNFISKLG  600
IQDLRHLMGV LENKAGRSNE GNS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019182368.1	0.0	PREDICTED: uncharacterized protein LOC109177439
TrEMBL	A0A068UVV8	0.0	A0A068UVV8_COFCA; Uncharacterized protein
STRING	VIT_18s0001g03670.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10723	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	4e-98	C2H2-like zinc finger protein