PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000921.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 436aa MW: 48499.4 Da PI: 7.5401 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.2e-17 | 126 | 172 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd l ++vkq+G++ W+ Ia+ m gR +kqc++rw+++l Itr_sc000921.1_g00007.1 126 KGQWSEEEDRVLMRLVKQFGMRKWSQIAENMV-GRAGKQCRERWHNHL 172 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 179 | 220 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + W++eE+ llv+ +++lG++ W+ Ia++++ gRt++ +k++w+ Itr_sc000921.1_g00007.1 179 DGWSEEEERLLVEEHEKLGNK-WAEIAKRIP-GRTENAIKNHWN 220 56*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.593 | 121 | 176 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-30 | 124 | 219 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-15 | 125 | 174 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-27 | 127 | 180 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.37E-14 | 129 | 172 | No hit | No description |
Pfam | PF13921 | 7.0E-19 | 129 | 189 | No hit | No description |
PROSITE profile | PS51294 | 20.025 | 177 | 227 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 177 | 225 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 181 | 225 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 436 aa Download sequence Send to blast |
MEGGGGGSFG HVNFHNHPSH PFLPSPIDRF LWNHQQALNV EDEGQICPPE NGVYDDFPPP 60 ASSLHGHAPS WPSLPEASFV DSHHHGQTIR QELRSLINDA NKVVDAGKRA NDNHGSGSSS 120 SSTLIKGQWS EEEDRVLMRL VKQFGMRKWS QIAENMVGRA GKQCRERWHN HLRPDIKKDG 180 WSEEEERLLV EEHEKLGNKW AEIAKRIPGR TENAIKNHWN ATKRRQNSRR KSNRKQNNNG 240 KGVSASASSK KTRSTVLQDY IIAKCFNVAV DAPPPSGTGA GGISSVSEDP SIQFGSDDYD 300 DGAGGGSSPS LLTHPTNDEE MNFMEALFGK TTPKTNNSQS PIMDSKPKEE DEENCRRRSS 360 SRFYFPNPNN VVNTTTTPLQ RCPDRYLSNF LDGPTPPSSS SSNGGELFMR SYHGGRRNHA 420 SKDIDLMELV FPSSHR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-42 | 124 | 226 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-42 | 124 | 226 | 2 | 104 | C-Myb DNA-Binding Domain |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A328D0C3 | 1e-111 | A0A328D0C3_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4825 | 19 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58850.1 | 2e-43 | myb domain protein 119 |