PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000921.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 436aa    MW: 48499.4 Da    PI: 7.5401
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000921.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-17126172148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g W++eEd  l ++vkq+G++ W+ Ia+ m  gR +kqc++rw+++l
  Itr_sc000921.1_g00007.1 126 KGQWSEEEDRVLMRLVKQFGMRKWSQIAENMV-GRAGKQCRERWHNHL 172
                              799*****************************.*************97 PP

2Myb_DNA-binding51.81.8e-16179220245
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              + W++eE+ llv+ +++lG++ W+ Ia++++ gRt++ +k++w+
  Itr_sc000921.1_g00007.1 179 DGWSEEEERLLVEEHEKLGNK-WAEIAKRIP-GRTENAIKNHWN 220
                              56*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.593121176IPR017930Myb domain
SuperFamilySSF466895.24E-30124219IPR009057Homeodomain-like
SMARTSM007174.6E-15125174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-27127180IPR009057Homeodomain-like
CDDcd001672.37E-14129172No hitNo description
PfamPF139217.0E-19129189No hitNo description
PROSITE profilePS5129420.025177227IPR017930Myb domain
SMARTSM007171.7E-15177225IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-19181225IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEGGGGGSFG HVNFHNHPSH PFLPSPIDRF LWNHQQALNV EDEGQICPPE NGVYDDFPPP  60
ASSLHGHAPS WPSLPEASFV DSHHHGQTIR QELRSLINDA NKVVDAGKRA NDNHGSGSSS  120
SSTLIKGQWS EEEDRVLMRL VKQFGMRKWS QIAENMVGRA GKQCRERWHN HLRPDIKKDG  180
WSEEEERLLV EEHEKLGNKW AEIAKRIPGR TENAIKNHWN ATKRRQNSRR KSNRKQNNNG  240
KGVSASASSK KTRSTVLQDY IIAKCFNVAV DAPPPSGTGA GGISSVSEDP SIQFGSDDYD  300
DGAGGGSSPS LLTHPTNDEE MNFMEALFGK TTPKTNNSQS PIMDSKPKEE DEENCRRRSS  360
SRFYFPNPNN VVNTTTTPLQ RCPDRYLSNF LDGPTPPSSS SSNGGELFMR SYHGGRRNHA  420
SKDIDLMELV FPSSHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-421242262104C-Myb DNA-Binding Domain
1msf_C1e-421242262104C-Myb DNA-Binding Domain
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A328D0C31e-111A0A328D0C3_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-43myb domain protein 119