PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000910.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 854aa MW: 98124.3 Da PI: 7.1157

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000910.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.4	8.9e-27	80	187	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvk 69 fY+eYAk++GFsv +++s++s+ +g++++++fvC+++g++++++ + +++ r++++ ++t+Cka+l+vk Itr_sc000910.1_g00003.1 80 FYKEYAKSIGFSVIIKASRRSRISGKFIDAKFVCTRYGSKQKSSVSetpeavanidgtnnipikKKRGRKNQSLSKTDCKACLHVK 165 9**************************************999889************99999************** PP FAR1 70 kekdgkwevtkleleHnHelap 91 + +dg w+++++ +eHnHe++p Itr_sc000910.1_g00003.1 166 RGSDGMWVIHTFIKEHNHEIVP 187 *****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-25	80	187	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-30	303	395	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.447	582	618	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.2E-8	584	617	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.4E-8	593	620	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 854 aa Download sequence Send to blast
MGIDLERPSE ELHRDKGNEV CCTEEAAASA AMTVQHDQEN FRPKDTHLVS DGDRVPLSHH 60 KFLEPHDGME FESKEDAFLF YKEYAKSIGF SVIIKASRRS RISGKFIDAK FVCTRYGSKQ 120 KSSVSETPEA VANIDGTNNI PIKKKRGRKN QSLSKTDCKA CLHVKRGSDG MWVIHTFIKE 180 HNHEIVPVQS YNVQGHRNLD QGHNNADAMH AVRDRTKKMC ASMHRQSGVA KKLENNGSTN 240 VGAQNLALDE RDAESMLEYF LHMQDDNPNF FYALDLNQEQ CLRNAFWIDA KARLDYHHFC 300 DAVFFDTAYI KNEYKLPLVT FIGVNHHFQL LLFGCALIAD ESKSTFVWLM RAWLRAMGGQ 360 APKVILTDED TALKEAVAEV FPDSRHCFCL WHVLSKIPEK LGSVIRRCEK FSTKFNKCIL 420 KSVTDEQFQK RWLKIVDRFD LRNDLWIQSL YEDRLRWVPV YMNSIFLAGI STMQRLESVI 480 SVLDKCMQRK TTLKEFLDQY KNILQEMGED EAKADFETWH RKPGLKSPSP FGKQMAALYT 540 HAIFKKFQIE VLGVVACHPK RESGNGETAT FRVQDFEENQ DFIVFWNEKT SDTSCSCRLF 600 EYKGILCRHI MIVLQMAGVY NIPSKYILKR WTKDAKSRET VRLVDSVESR VQRYTDICQR 660 VFKLGDEGSL SQESYNLAFI ALEKALRKCE RVNSSIQYEV ELCSPSNQDL NNFEEATQSN 720 CAQQTNEKNE SRRDKVQMEQ EGLAISIHDS WQQMGQLNSR VATLDAYFSS HQVVPGVGQM 780 NTISSIYSNQ PGIQELGQLN TTAPVDNGPY LTQPRLHGLT QLHFRPQSLQ NYFEMPESLQ 840 DLHEYNGDAL PDIR

Sequence ? help Back to Top

Protein Sequence Length: 854 aa Download sequence Send to blast

MGIDLERPSE ELHRDKGNEV CCTEEAAASA AMTVQHDQEN FRPKDTHLVS DGDRVPLSHH  60
KFLEPHDGME FESKEDAFLF YKEYAKSIGF SVIIKASRRS RISGKFIDAK FVCTRYGSKQ  120
KSSVSETPEA VANIDGTNNI PIKKKRGRKN QSLSKTDCKA CLHVKRGSDG MWVIHTFIKE  180
HNHEIVPVQS YNVQGHRNLD QGHNNADAMH AVRDRTKKMC ASMHRQSGVA KKLENNGSTN  240
VGAQNLALDE RDAESMLEYF LHMQDDNPNF FYALDLNQEQ CLRNAFWIDA KARLDYHHFC  300
DAVFFDTAYI KNEYKLPLVT FIGVNHHFQL LLFGCALIAD ESKSTFVWLM RAWLRAMGGQ  360
APKVILTDED TALKEAVAEV FPDSRHCFCL WHVLSKIPEK LGSVIRRCEK FSTKFNKCIL  420
KSVTDEQFQK RWLKIVDRFD LRNDLWIQSL YEDRLRWVPV YMNSIFLAGI STMQRLESVI  480
SVLDKCMQRK TTLKEFLDQY KNILQEMGED EAKADFETWH RKPGLKSPSP FGKQMAALYT  540
HAIFKKFQIE VLGVVACHPK RESGNGETAT FRVQDFEENQ DFIVFWNEKT SDTSCSCRLF  600
EYKGILCRHI MIVLQMAGVY NIPSKYILKR WTKDAKSRET VRLVDSVESR VQRYTDICQR  660
VFKLGDEGSL SQESYNLAFI ALEKALRKCE RVNSSIQYEV ELCSPSNQDL NNFEEATQSN  720
CAQQTNEKNE SRRDKVQMEQ EGLAISIHDS WQQMGQLNSR VATLDAYFSS HQVVPGVGQM  780
NTISSIYSNQ PGIQELGQLN TTAPVDNGPY LTQPRLHGLT QLHFRPQSLQ NYFEMPESLQ  840
DLHEYNGDAL PDIR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019160611.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 1
TrEMBL	F6HF67	0.0	F6HF67_VITVI; Uncharacterized protein
STRING	VIT_01s0011g01470.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein