PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000909.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 337aa MW: 36321.3 Da PI: 9.3721

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000909.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6.1e-39	39	98	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rkn+k+ Itr_sc000909.1_g00010.1 39 EQQPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNNKR 98 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-28	37	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.2E-33	41	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.292	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MMNSYQTDGK SLMASSSSSS PSSSSTAARV MEKPISQSEQ QPLKCPRCDS SNTKFCYYNN 60 YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNNKRIR RSSSSSSSPA AINVSSSSTS 120 PAVSSAPLQI PAPQTKPQIN PLFYGLPINP NSELNPPFPR LFGSRVSSSE SFDNSNHDSS 180 MISSSSPGLL GGHGENGFKF VSSSSSNPLL SSYPVFTSSS SILTTPISTS TTTLASLIAS 240 SLEQRKFNAS GDITNRNFPG MPSYIGESVM AGNMILENEE FLKGESQNRL NWNGGVPMNP 300 MNNHNVHTEG VVNFNYSTPS SDPSFPWNGG WMEPSLI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019162067.1	1e-154	PREDICTED: dof zinc finger protein DOF1.4-like isoform X1
Refseq	XP_019162068.1	1e-154	PREDICTED: dof zinc finger protein DOF1.4-like isoform X2
TrEMBL	A0A314L1I6	2e-69	A0A314L1I6_NICAT; Dof zinc finger protein dof1.4
STRING	XP_009623141.1	3e-70	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	3e-33	Dof family protein