PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000909.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HB-other
Protein Properties Length: 1608aa    MW: 180594 Da    PI: 5.2137
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000909.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.2e-192782257
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                              kR+  t+ ql++Le++++++ yp++++r+eL++klgLt+rq ++WF+ rR k+kk
  Itr_sc000909.1_g00001.1 27 PKRQMKTPFQLQTLEKAYAMETYPTEATRAELSDKLGLTDRQLQMWFCHRRLKDKK 82
                             69****************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-19883IPR009057Homeodomain-like
SuperFamilySSF466891.97E-171583IPR009057Homeodomain-like
PROSITE profilePS5007116.9252383IPR001356Homeobox domain
SMARTSM003891.1E-182587IPR001356Homeobox domain
PfamPF000461.3E-162782IPR001356Homeobox domain
CDDcd000869.67E-152883No hitNo description
PfamPF050663.5E-13658725IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.2E-6856899IPR028942WHIM1 domain
PfamPF156132.2E-1410231095IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1608 aa     Download sequence    Send to blast
MEGGSEGEES NKNANHSPSD GGQHKKPKRQ MKTPFQLQTL EKAYAMETYP TEATRAELSD  60
KLGLTDRQLQ MWFCHRRLKD KKEAAGGSAV KPRVGHADGI GGKRSFMESP RDEEMAEPGS  120
DHGSGSGSGS RSSQFDNGDD MPTGQLKYYE PPRVVKQHQI IACIEVQLGH PLREDGPVLG  180
VEFDELPPGA FGASIVETQH RDRYQHSYER MSFGSREAKQ INTLPKTSCE PAVHKARSDR  240
YGQVGPSYIY DSPVNGPSAK TLSVTESSGN LPREYCAEGH ASSANLLFQQ SRQGQFSSPT  300
GDGEFIPCNE GTSQMERKRK TDEARTEREV QAHEKRIRKE LEKQDLLRKK MEEQMKKEME  360
KQDRERRKEE KRMMREQQRM EERFQREERR EMERREKFMQ KELIKAERKR QKEELRRERE  420
AAKQKAAMER AAARKFAKES MELIEDERLE LMELAASSKG LPSILSLDYN TLQNLELFRE  480
FLCDFPPKSV QMKKPFPIQP WIDSDDNVGN LLMDSRLLSE IHIVLLKLII KDIEDVARTP  540
SGGPGTNQYS AVNPEGGHPK IVEGAYLWGF NICNWKKHLN LLTWPEVLRQ LGLSAGFGPQ  600
LKKKKKEGAN FNDSDETKGC EDIVSTLRSG SAAENAVAVM QEKGHMLQRK SRHRLTPGTV  660
KFAAYHVLAL EGEKGLNVID LAEKIQKSGL RDLRTSKTPE ASISVALSRD PVLFERIAPS  720
TYCVRPAFRK DPADAEAIIS AAREKIQRYL NGFLAGQNGD DEERDDDSEC DATDVPEVDD  780
LGTPSAANKP SDQQSEVEAC SLNEKDILPE ETLPNGFDTV DSWKLLVVNL LIDVAHKGIR  840
ESNPGQEGEE IDESKSGEPW VQGLTEGEYS DLCVEERLNA LTALISLANE GNSIRAILEE  900
RLDAANALKK QMWAEAQLDK RRTKDENLNK LPDSSFNAVA EGSQSPLAIP DYKNHEASAT  960
AEVNETSTGN TSVKRHLEIF SAEKSSVAQE VTTNLPSGHT AERSRMQLKS FIGHKAEEMY  1020
VYRSLPLGQD RRRNRYWLFV ASGSSHDPGS GRIFVESPGG CWKVIDTEEA FDALLTSLET  1080
RGIRESHLHM MLQKIEVPFR ERVRSTISNA DSMVQHRNTT GNEATEASIS PACYANVDSP  1140
NSMVCNINFE GCEYSSSFKI ELGRNEVEKG SALRKYQDFQ IWMWKEFFGS SNLCSVEFRK  1200
KRAFGKVDGI INFLEPSINV DRIKVDSKDL IVSSPSRIRM IKALLSMLEV SMPSEALQPS  1260
WTEECRRIWG LRLQNSSSTE DLLQNLTQLE GFLKRDYLSS SFETTKELLG CSTSRFTACH  1320
SAFPGSVPEL PWIPQTTAAV GLRLLELDAA VSYDPDQNTN ELKKPALGFA STKNLQKVDP  1380
MVLDQNGQLK EENWNYSGSA PGRQVARSKG FGRPGGRWPK ETAASVSGSS RPSARHSETL  1440
TQVLMQQGEA QGHKHRRGRR TLRRRRTEKL VIDEIQPGDE ENLERYAQSP RSNGHEREAI  1500
DMNIGRMQVE NDENSSSEES DDSAQENPYE FGKRQVHFKV SNRGDDMMEI TNDDVDDSSD  1560
DDQCGYPDYN QNLGGDVDME DGEDELDGNG DSEDDQGSDS EVHGDYSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17582RRLKDKKE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755147e-57HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162698.10.0PREDICTED: homeobox-DDT domain protein RLT1-like
RefseqXP_019162699.10.0PREDICTED: homeobox-DDT domain protein RLT1-like
TrEMBLA0A314L9770.0A0A314L977_NICAT; Homeobox-ddt domain protein rlt1
STRINGXP_009613460.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21422352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1