PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000909.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 1608aa MW: 180594 Da PI: 5.2137 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4.2e-19 | 27 | 82 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ ql++Le++++++ yp++++r+eL++klgLt+rq ++WF+ rR k+kk Itr_sc000909.1_g00001.1 27 PKRQMKTPFQLQTLEKAYAMETYPTEATRAELSDKLGLTDRQLQMWFCHRRLKDKK 82 69****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-19 | 8 | 83 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-17 | 15 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.925 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-18 | 25 | 87 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-16 | 27 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.67E-15 | 28 | 83 | No hit | No description |
Pfam | PF05066 | 3.5E-13 | 658 | 725 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 1.2E-6 | 856 | 899 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 2.2E-14 | 1023 | 1095 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1608 aa Download sequence Send to blast |
MEGGSEGEES NKNANHSPSD GGQHKKPKRQ MKTPFQLQTL EKAYAMETYP TEATRAELSD 60 KLGLTDRQLQ MWFCHRRLKD KKEAAGGSAV KPRVGHADGI GGKRSFMESP RDEEMAEPGS 120 DHGSGSGSGS RSSQFDNGDD MPTGQLKYYE PPRVVKQHQI IACIEVQLGH PLREDGPVLG 180 VEFDELPPGA FGASIVETQH RDRYQHSYER MSFGSREAKQ INTLPKTSCE PAVHKARSDR 240 YGQVGPSYIY DSPVNGPSAK TLSVTESSGN LPREYCAEGH ASSANLLFQQ SRQGQFSSPT 300 GDGEFIPCNE GTSQMERKRK TDEARTEREV QAHEKRIRKE LEKQDLLRKK MEEQMKKEME 360 KQDRERRKEE KRMMREQQRM EERFQREERR EMERREKFMQ KELIKAERKR QKEELRRERE 420 AAKQKAAMER AAARKFAKES MELIEDERLE LMELAASSKG LPSILSLDYN TLQNLELFRE 480 FLCDFPPKSV QMKKPFPIQP WIDSDDNVGN LLMDSRLLSE IHIVLLKLII KDIEDVARTP 540 SGGPGTNQYS AVNPEGGHPK IVEGAYLWGF NICNWKKHLN LLTWPEVLRQ LGLSAGFGPQ 600 LKKKKKEGAN FNDSDETKGC EDIVSTLRSG SAAENAVAVM QEKGHMLQRK SRHRLTPGTV 660 KFAAYHVLAL EGEKGLNVID LAEKIQKSGL RDLRTSKTPE ASISVALSRD PVLFERIAPS 720 TYCVRPAFRK DPADAEAIIS AAREKIQRYL NGFLAGQNGD DEERDDDSEC DATDVPEVDD 780 LGTPSAANKP SDQQSEVEAC SLNEKDILPE ETLPNGFDTV DSWKLLVVNL LIDVAHKGIR 840 ESNPGQEGEE IDESKSGEPW VQGLTEGEYS DLCVEERLNA LTALISLANE GNSIRAILEE 900 RLDAANALKK QMWAEAQLDK RRTKDENLNK LPDSSFNAVA EGSQSPLAIP DYKNHEASAT 960 AEVNETSTGN TSVKRHLEIF SAEKSSVAQE VTTNLPSGHT AERSRMQLKS FIGHKAEEMY 1020 VYRSLPLGQD RRRNRYWLFV ASGSSHDPGS GRIFVESPGG CWKVIDTEEA FDALLTSLET 1080 RGIRESHLHM MLQKIEVPFR ERVRSTISNA DSMVQHRNTT GNEATEASIS PACYANVDSP 1140 NSMVCNINFE GCEYSSSFKI ELGRNEVEKG SALRKYQDFQ IWMWKEFFGS SNLCSVEFRK 1200 KRAFGKVDGI INFLEPSINV DRIKVDSKDL IVSSPSRIRM IKALLSMLEV SMPSEALQPS 1260 WTEECRRIWG LRLQNSSSTE DLLQNLTQLE GFLKRDYLSS SFETTKELLG CSTSRFTACH 1320 SAFPGSVPEL PWIPQTTAAV GLRLLELDAA VSYDPDQNTN ELKKPALGFA STKNLQKVDP 1380 MVLDQNGQLK EENWNYSGSA PGRQVARSKG FGRPGGRWPK ETAASVSGSS RPSARHSETL 1440 TQVLMQQGEA QGHKHRRGRR TLRRRRTEKL VIDEIQPGDE ENLERYAQSP RSNGHEREAI 1500 DMNIGRMQVE NDENSSSEES DDSAQENPYE FGKRQVHFKV SNRGDDMMEI TNDDVDDSSD 1560 DDQCGYPDYN QNLGGDVDME DGEDELDGNG DSEDDQGSDS EVHGDYSD |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 75 | 82 | RRLKDKKE |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 7e-57 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019162698.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT1-like | ||||
Refseq | XP_019162699.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT1-like | ||||
TrEMBL | A0A314L977 | 0.0 | A0A314L977_NICAT; Homeobox-ddt domain protein rlt1 | ||||
STRING | XP_009613460.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2142 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |