PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000904.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 204aa    MW: 23034.1 Da    PI: 7.5748
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000904.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19122172255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrd      k +r++lg+f+ta+eAa a+++a+++++g
  Itr_sc000904.1_g00017.1 122 RYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFDTAKEAAMAYDKAALRIRG 172
                              7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.841122180IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-23122181IPR016177DNA-binding domain
PfamPF008472.4E-14122172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31122180IPR001471AP2/ERF domain
SMARTSM003802.5E-37122186IPR001471AP2/ERF domain
PRINTSPR003675.2E-11123134IPR001471AP2/ERF domain
CDDcd000181.83E-24130180No hitNo description
PRINTSPR003675.2E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDASEAILEN VWANFIAKGE AEKAKENWEQ LPNLDDGGDV SSMEKVLQRL PSLGRWISMG  60
AEAWEQLLDG IIVVPYNDNN KFVSNMVSEH GSEHHEDLSS SSLSTCNGEL EKRAEKTVVE  120
RRYRGVRRRP WGKYAAEIRD SSRKGARVWL GTFDTAKEAA MAYDKAALRI RGPKARLNFP  180
FKMEPKTLEV SCLLQNGRDL KIHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-25121183466ATERF1
3gcc_A1e-25121183466ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168897.11e-110PREDICTED: ethylene-responsive transcription factor ERF091-like
TrEMBLA0A1U8MYZ84e-62A0A1U8MYZ8_GOSHI; ethylene-responsive transcription factor ERF091-like
STRINGXP_007148087.13e-62(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112371823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.17e-21ERF family protein