PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000903.1_g00012.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 513aa MW: 53298.1 Da PI: 8.4922

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000903.1_g00012.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Itr_sc000903.1_g00012.1 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	14.5	0.00011	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H + + Itr_sc000903.1_g00012.1 142 WKCDKCSKKYAVQSDLKAHSKIC 164 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.09E-7	65	88	No hit	No description
PROSITE profile	PS50157	10.949	66	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	66	88	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.2E-5	66	88	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	107	137	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.9E-5	130	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.09E-7	137	162	No hit	No description
PROSITE profile	PS50157	8.746	142	170	IPR007087	Zinc finger, C2H2
SMART	SM00355	66	142	162	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MPVDGDNSSA VNDSTGSGEA SVSSSGNQAA PPKATSKKRR NLPGMPDPDA EVIALSPKTL 60 LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSN EVKKKVYVCP EPTCVHHDPS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTKEYK CDCGTLFSRK 180 DSFITHRAFC DALAVESAKA QTDMAAPSAD EEPVPPSSSP PPQPPPQPTI APPPPPPVTP 240 QSTPAVPSVL AVQKQPVLPE NPGTNLPGST PKQVVEETTV ITSLTGSCSC SSSSSSNGSS 300 SSSVFASLFA SATASGTARS QASGFADMFQ SMAPEKTLEI APQPSSKETI SLCLAMNHGS 360 SIFGPPGQDR RQFAPSPQPA MSATALLQKA AQMGAAATNS SFLRGLGIVS SSSPSSGQQE 420 WSGRQIETDA GLGLSLPCDG GSGLKELMLG TPSVFGPKHP TLDLLGLGMA AGGGPSPGLS 480 ALMTSMGGNI DVAAAAGSFG TTDFSGKDIG RNS

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MPVDGDNSSA VNDSTGSGEA SVSSSGNQAA PPKATSKKRR NLPGMPDPDA EVIALSPKTL  60
LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSN EVKKKVYVCP EPTCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTKEYK CDCGTLFSRK  180
DSFITHRAFC DALAVESAKA QTDMAAPSAD EEPVPPSSSP PPQPPPQPTI APPPPPPVTP  240
QSTPAVPSVL AVQKQPVLPE NPGTNLPGST PKQVVEETTV ITSLTGSCSC SSSSSSNGSS  300
SSSVFASLFA SATASGTARS QASGFADMFQ SMAPEKTLEI APQPSSKETI SLCLAMNHGS  360
SIFGPPGQDR RQFAPSPQPA MSATALLQKA AQMGAAATNS SFLRGLGIVS SSSPSSGQQE  420
WSGRQIETDA GLGLSLPCDG GSGLKELMLG TPSVFGPKHP TLDLLGLGMA AGGGPSPGLS  480
ALMTSMGGNI DVAAAAGSFG TTDFSGKDIG RNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-31	138	202	3	67	Zinc finger protein JACKDAW
5b3h_F	4e-31	138	202	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019154669.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-173	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A3Q7F7K4	0.0	A0A3Q7F7K4_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400033039	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-108	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]