PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000892.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family AP2
Protein Properties Length: 515aa    MW: 56330.6 Da    PI: 6.0008
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000892.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.53.3e-08232286155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV+  +++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g
  Itr_sc000892.1_g00017.1 232 SIYRGVT--RWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 286
                              579***7..48**********4444.2344336655.7799999*************98 PP
2AP249.88.6e-16329380155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Itr_sc000892.1_g00017.1 329 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 380
                              57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-12232295IPR016177DNA-binding domain
CDDcd000189.34E-16232296No hitNo description
Gene3DG3DSA:3.30.730.102.9E-10233295IPR001471AP2/ERF domain
PROSITE profilePS5103214.157233294IPR001471AP2/ERF domain
SMARTSM003801.7E-17233300IPR001471AP2/ERF domain
PfamPF008471.7E-4233286IPR001471AP2/ERF domain
CDDcd000181.13E-11329390No hitNo description
SuperFamilySSF541717.85E-18329390IPR016177DNA-binding domain
PfamPF008474.5E-10329380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-18330389IPR001471AP2/ERF domain
PROSITE profilePS5103219.151330388IPR001471AP2/ERF domain
SMARTSM003807.7E-32330394IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MAPENNWLSF SLSPQFHHQS TVELNASFDG SSSTDSQHYY FSDNFYANGW ANQKVEVMYS  60
EAENHENEVS GNGGESCIFQ GLMESQIPAA AAQPPAPPKL EDFLGGDTLV RYSDSQTETQ  120
DSSLTHLYDQ GGSAAAYFNE HQDFRAVAGF QAFSTNSGSE VDDSASMART QVMAGEFTTS  180
QCIESGHELA YSHCPTGSLS LAVNTHNSEK AIVSADSESS KKISDTFGQR TSIYRGVTRW  240
TGRYEAHLWD NSCRREGQAR KGRQGGYDKE DKAARAYDLA ALKYWGPTAT TNFPVTNYSK  300
ELEDMKHMSK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT  360
FATEEEAAEA YDIAAIKFRG VNAVTNFEMS RYDVEAIMNS SLPIGGAAKR LKLSLESDQK  420
TSSVAVSQHE QCGANNNSSS SNINFGSIQP VSAIPCGIPF EATTPFYHHS HLFHPLHPAN  480
VGPDSSGATS SLANAMAPLQ QQPSSAGFFI WPQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185663.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-170AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1R3GDZ80.0A0A1R3GDZ8_COCAP; Uncharacterized protein
STRINGVIT_00s1291g00010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-169AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]