PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000887.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 275aa    MW: 30557.9 Da    PI: 7.4654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000887.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-161462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             rg+W++eEd  l+ + +++G+g +W + +++ g++R++k+c++rw++yl
  Itr_sc000887.1_g00015.1 14 RGPWSPEEDTTLKSYLEKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                             89*********************************************97 PP
2Myb_DNA-binding46.31e-1469111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g +T eEd++++ + +  G++ W+ Ia++++ gRt++++k++w++
  Itr_sc000887.1_g00015.1  69 GGFTDEEDQIILTLYTNIGSR-WSVIASHLP-GRTDNDVKNYWNT 111
                              569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.679962IPR017930Myb domain
SuperFamilySSF466891.37E-2712109IPR009057Homeodomain-like
SMARTSM007171.6E-111364IPR001005SANT/Myb domain
PfamPF002492.2E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-241569IPR009057Homeodomain-like
CDDcd001676.79E-91662No hitNo description
PROSITE profilePS5129421.79663117IPR017930Myb domain
SMARTSM007177.3E-1367115IPR001005SANT/Myb domain
PfamPF002491.8E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2570117IPR009057Homeodomain-like
CDDcd001672.73E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRAPCCDKT KVKRGPWSPE EDTTLKSYLE KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTDEEDQIIL TLYTNIGSRW SVIASHLPGR TDNDVKNYWN TKLKKKLAAA  120
TNNNPAVFPQ TVPTNFNPTT YYAVQEMVGS QPHQFPLPNL IEVQENCANT ANVSSYNPQV  180
SAACGGYSTS FAYNNNNENS FGTSWFGNGG IEEDVFRMDM MSSSTGLSSS SSPSSSSPSC  240
FDHLMMNYGF DFQDNFAPPN ITHNFTNHPS NGFQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192042.11e-163PREDICTED: transcription factor MYB36-like
TrEMBLA0A328CVY77e-86A0A328CVY7_9ASTE; Uncharacterized protein
TrEMBLA0A484KLS47e-83A0A484KLS4_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000009326e-79(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-67myb domain protein 36