PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000885.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 163aa    MW: 18464.3 Da    PI: 4.7663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000885.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18856355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             y GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa+a++ a+  l+g
  Itr_sc000885.1_g00009.1  8 YVGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAAFHLRG 56
                             99***999.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-36770IPR001471AP2/ERF domain
PROSITE profilePS5103222.234764IPR001471AP2/ERF domain
PfamPF008472.7E-12756IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-31765IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-22765IPR016177DNA-binding domain
CDDcd000181.95E-22866No hitNo description
PRINTSPR003671.1E-11819IPR001471AP2/ERF domain
PRINTSPR003671.1E-114666IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEGSMGVYVG VRKRKWGKWV SEIREPGKKT RIWLGSFETP EMAAAAYDVA AFHLRGCKAR  60
LNFPELVESF PKPASSQPED VRLAAHQAAL GFKPPPEPPG AGLRPVRIGL SPNQIQAINE  120
TPMDSPNKMW MELLIREPPL MICEDMMELE DWEEIQDDSI WDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-18869668ATERF1
3gcc_A3e-18869668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152030.11e-100PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I25e-51ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A2C9WFS22e-63A0A2C9WFS2_MANES; Uncharacterized protein
STRINGcassava4.1_025138m3e-64(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-53ERF family protein