PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000881.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 577aa    MW: 64144.4 Da    PI: 5.6316
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000881.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.72.5e-1282085762373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              ++lL+ecA+a+++++l   ++l++  +  +s +gdp+qRl ay+ e+L ar   s++++y++l+++e +    ++ l+++++++e+
  Itr_sc000881.1_g00008.1 208 KQLLIECARALDENKLLDFDRLIEVARCAVSITGDPIQRLGAYMIEGLVARKEASGTNIYRTLKCKEPA---GDDLLSYMHILYEI 290
                              799*****************************************************************9...9************* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                              +P+lkf++++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  + + l  +g+rLa + e+
  Itr_sc000881.1_g00008.1 291 CPYLKFGYMAANGAIAEACRNEDRIHIIDFQICQGTQWMTLLQALAARPGGAPYVRITGIDDPLSKhaRGDGLVMVGKRLAAISEK 376
                              **************************************************************98888899**************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                              +++p+efn+ v     +++ e+L+++p+EalaVn+ lqlh+++desv+++++rd +L++vkslsPkvv++veqe+++n+++F+ rf
  Itr_sc000881.1_g00008.1 377 FNIPVEFNP-VPVFAPQVTREMLDIRPDEALAVNFPLQLHHTPDESVDVSNPRDGLLRMVKSLSPKVVTLVEQESNTNTAPFFSRF 461
                              *********.6888999********************************************************************* PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                              +ealeyysa+f+sl++ lpr+ +eri+vE+++l+r+ivnv+aceg+er+erhe l+kW++r+++aGF+++pls+++++ +k ll+ 
  Itr_sc000881.1_g00008.1 462 IEALEYYSAMFESLDVVLPRDRKERINVEQHCLARDIVNVIACEGKERVERHELLGKWKSRFTMAGFQQYPLSSYVNSVIKGLLKC 547
                              ************************************************************************************99 PP

                     GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaW 373
                              ++ + y++ e++g+++lgWk+r+L+s+SaW
  Itr_sc000881.1_g00008.1 548 YS-EHYTLLEKDGAMLLGWKERNLISASAW 576
                              98.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.578181558IPR005202Transcription factor GRAS
PfamPF035148.5E-126208576IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MDSHQFIAYG VDLSFSSFPQ TSSLPATLFD SLKFDSTSSP NSPFSNCFDP QTATTLSDSQ  60
ELYSSTENLS GASPSSNSSL DYNSYPQRCS PASDCLPESL VLPSGEYTFL RNVNHNEKMK  120
HVLWQLESAL MGPDGVGATN SDPSAGENTQ KQTSSQGSRS WSQEAQGSGR YESQQSSFGR  180
SGEGIHSEKR HKTMFDFPAQ GGPPVNIKQL LIECARALDE NKLLDFDRLI EVARCAVSIT  240
GDPIQRLGAY MIEGLVARKE ASGTNIYRTL KCKEPAGDDL LSYMHILYEI CPYLKFGYMA  300
ANGAIAEACR NEDRIHIIDF QICQGTQWMT LLQALAARPG GAPYVRITGI DDPLSKHARG  360
DGLVMVGKRL AAISEKFNIP VEFNPVPVFA PQVTREMLDI RPDEALAVNF PLQLHHTPDE  420
SVDVSNPRDG LLRMVKSLSP KVVTLVEQES NTNTAPFFSR FIEALEYYSA MFESLDVVLP  480
RDRKERINVE QHCLARDIVN VIACEGKERV ERHELLGKWK SRFTMAGFQQ YPLSSYVNSV  540
IKGLLKCYSE HYTLLEKDGA MLLGWKERNL ISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-662075774375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196760.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1S4AG000.0A0A1S4AG00_TOBAC; scarecrow-like protein 21
TrEMBLA0A1U7XNQ00.0A0A1U7XNQ0_NICSY; scarecrow-like protein 21
STRINGXP_009788119.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-176GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]