PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000875.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 34708.2 Da PI: 7.162 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.2 | 2.7e-52 | 21 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +ppGfrFhPtdeelvv+yL++k++++++++ +i+e+d+yk++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkat Itr_sc000875.1_g00001.1 21 MPPGFRFHPTDEELVVHYLCRKCASQSISV-PIIAEIDLYKFDPWQLPDMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKAT 105 79****************************.88***************6666689******************************* PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g dk+v + ++ g+kk Lvfy g+apkg+kt+W+mheyrl Itr_sc000875.1_g00001.1 106 GADKPVGK--PKTLGIKKALVFYAGKAPKGVKTNWIMHEYRL 145 ******98..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.68E-63 | 14 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.873 | 21 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-27 | 22 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MKNNGGILNN NEQQQQQQLE MPPGFRFHPT DEELVVHYLC RKCASQSISV PIIAEIDLYK 60 FDPWQLPDMA LYGEKEWYFF SPRDRKYPNG SRPNRAAGTG YWKATGADKP VGKPKTLGIK 120 KALVFYAGKA PKGVKTNWIM HEYRLANVDR SAGKKNNLRL DDWVLCRIYN KKGTVEKYYN 180 AVDQNDVVLP KMEDQKPNIT QFSQSATMLK QAALPPMVQN QHDYMHFDTS ESVLRWHTDS 240 SCCSEQVLSS PEFAADKEVQ SAPKWDDLDF QLNNFIDDPF QVPQYNDPFQ DMFTYMHKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-85 | 10 | 177 | 4 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ280387 | 0.0 | GQ280387.1 Ipomoea batatas cultivar Tainong 57 NAC1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019200440.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-122 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2Z5HVI1 | 0.0 | A0A2Z5HVI1_IPOBA; NAC1-like protein | ||||
STRING | XP_009616658.1 | 1e-141 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-123 | NAC family protein |