PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000867.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 326aa MW: 35128.4 Da PI: 8.6303

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000867.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46	1.2e-14	106	152	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Itr_sc000867.1_g00006.1 106 RVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 152 789*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.132	101	157	IPR017930	Myb domain
SuperFamily	SSF46689	6.46E-17	104	158	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.6E-17	105	155	IPR006447	Myb domain, plants
SMART	SM00717	8.0E-11	105	155	IPR001005	SANT/Myb domain
Pfam	PF00249	8.1E-12	106	152	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-11	106	152	IPR009057	Homeodomain-like
CDD	cd00167	2.06E-9	108	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MAALCRSQCV SSLRTCGESA ADDSAVDGAG GSGEIMLFGV RVKVDPMRKS VSLNNLSQYE 60 LPNDTNKNNE SAKNSPPPPP AAAAADEGYA SADDAVLHQP SSGRERVPWT EEEHKLFLLG 120 LQKVGKGDWR GISRNFVKTR TPTQVASHAQ KYFLRRSNLN RRRRRSSLFD ITTDSVAPMS 180 TADVKAPQEN STLAAMSPPT PLPTSEPSRI NPFSVSRIPV TVASVLQPVQ VEEKKPIENL 240 ASARPDDVNN PTSCRFIRPV PIVSVTTNPS APVELNLNQG MDTEPSSLSL SLSLSVNQRP 300 SSSSRHPMYP GMSSFNNGDT TITVSS

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019197319.1	1e-179	PREDICTED: transcription factor MYB1R1-like isoform X1
Swissprot	Q2V9B0	2e-83	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A1S4BYC0	2e-85	A0A1S4BYC0_TOBAC; transcription factor MYB1R1-like
TrEMBL	A0A1U7YVS4	2e-85	A0A1U7YVS4_NICSY; transcription factor MYB1R1-like
STRING	XP_009802855.1	3e-86	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	2e-50	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]