PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000863.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 267aa    MW: 30180.8 Da    PI: 8.8764
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000863.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20121169355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr+++ +g+W+AeIrdp+    +  r++lg+f taeeAa+a+++a+ +++g
  Itr_sc000863.1_g00007.1 121 YRGVRQRP-WGKWAAEIRDPR----KaVRVWLGTFKTAEEAARAYDRAAIEYRG 169
                              9*******.**********94....36*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-31120177IPR001471AP2/ERF domain
SMARTSM003803.5E-36120183IPR001471AP2/ERF domain
CDDcd000187.64E-33120177No hitNo description
SuperFamilySSF541712.09E-22120177IPR016177DNA-binding domain
PROSITE profilePS5103224.711120177IPR001471AP2/ERF domain
PfamPF008472.7E-14120169IPR001471AP2/ERF domain
PRINTSPR003675.9E-12121132IPR001471AP2/ERF domain
PRINTSPR003675.9E-12143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MQWSTQILQP EPFSPSQLSA AHQEFSIMVS ALQNVMNGGD ANFDSRFSSF SAAESTTTTF  60
TSPQTSLEGF AELPPLQDTC QLCKYEGCLG CNFFAAPDAR QMAKKKKSNA VVMKRKKKNN  120
YRGVRQRPWG KWAAEIRDPR KAVRVWLGTF KTAEEAARAY DRAAIEYRGP RAKLNFAFAD  180
YTNTTTVSAT TLKTNTKTRQ KHDKSPSSSS SVSDQPLQQV VQENSDHETN WSAPARIELR  240
NGDEEFQEWM RMLMDFNDVS SDYILQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22117176262ATERF1
3gcc_A4e-22117176262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103117KKKKSNAVVMKRKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166006.11e-127PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ066e-39EF109_ARATH; Ethylene-responsive transcription factor ERF109
STRINGXP_006487104.13e-56(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-34redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]