PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000850.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 242aa MW: 26041.1 Da PI: 9.0771 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.3 | 1.1e-10 | 45 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT....................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ +Wk+I + +g +t q++s+ qky Itr_sc000850.1_g00014.1 45 RESWTEPEHDKFLEALQLFNCClhandtllpqacdgegrfdrDWKKIEAFIG-SKTVIQIRSHAQKY 110 789****************999******************************.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.8E-12 | 39 | 116 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.0E-6 | 43 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-4 | 44 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-7 | 45 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.36E-5 | 47 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGMALANPDS ISSPTAVNSN APPPSSYSDD PTKKVRKPYT ITKSRESWTE PEHDKFLEAL 60 QLFNCCLHAN DTLLPQACDG EGRFDRDWKK IEAFIGSKTV IQIRSHAQKY FLKVQKSGTN 120 EHLPPPRPKR KAAHPYPQKA PKSAPTVSSL SNSFQTPLAF PDAGLTPKPD SSLIPIVPVT 180 SAALPSWKDY SAQAGSSSVK KDNMSSVGQA HVNTYSSSGN EGAPSELTDQ GANGSSMKGE 240 SN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF025314 | 2e-46 | EF025314.1 Catharanthus roseus clone 4C80 MYB transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019178038.1 | 1e-137 | PREDICTED: protein REVEILLE 6-like | ||||
Swissprot | Q8H0W3 | 1e-54 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A1J6K0C6 | 1e-80 | A0A1J6K0C6_NICAT; Protein reveille 6 | ||||
STRING | XP_009802901.1 | 9e-80 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA998 | 24 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 3e-42 | MYB_related family protein |
Publications ? help Back to Top | |||
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