PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000848.1_g00023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 170aa MW: 19174.7 Da PI: 9.1385 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 28 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Itr_sc000848.1_g00023.1 28 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 77 59*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.1E-37 | 28 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-29 | 28 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.904 | 28 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.2E-11 | 29 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-20 | 29 | 86 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.3E-11 | 29 | 40 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.37E-26 | 29 | 87 | No hit | No description |
PRINTS | PR00367 | 3.3E-11 | 67 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MNLKGEKMEM EGEVVGPCCS EKRKNERPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST 60 PVAAARAYDT AVYYLRGPSA RLNFPELLVS DGAGLSDLSA ASIRKRAVEV GARVDAIQTS 120 LGGHDRRPYK ARDGERASPC ATQLKPCWFQ EKPDLNEKPE PEDPDSGDYW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 29 | 86 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00276 | DAP | Transfer from AT2G23340 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019195412.1 | 1e-119 | PREDICTED: ethylene-responsive transcription factor RAP2-9-like | ||||
Swissprot | O22174 | 2e-51 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A0A3Q7FDJ0 | 6e-80 | A0A3Q7FDJ0_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400010228 | 1e-80 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 9e-54 | DREB and EAR motif protein 3 |
Publications ? help Back to Top | |||
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