PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000844.1_g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25398.3 Da PI: 9.7237 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.4 | 1.2e-08 | 125 | 165 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +Av+Y+k L Itr_sc000844.1_g00018.1 125 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 165 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.205 | 116 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-13 | 117 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.40E-11 | 118 | 170 | No hit | No description |
SuperFamily | SSF47459 | 3.14E-14 | 120 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.1E-12 | 122 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-6 | 126 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MDVNLMKSSS ENEMEIMTLL TMRPNNPHHH QPLENLGFSI HNPYDAGAGA ATLSFSGVHQ 60 HHPVAGAGAD PPRHKISSNG GSMEAMREMI FRIAMMQPIH IDPESVKPPR RKNVKISKDP 120 QSVAARHRRE RISEKIRILQ RLVPGGTKMD TASMLDEAVH YVKFLKKQLE YLEAAASGPT 180 PMIPGFPTTM SPPTLLDMNM NIMNYSSSST SGSMKACQAA IPSMGSNLQM L |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019182611.1 | 1e-123 | PREDICTED: transcription factor HEC2-like | ||||
TrEMBL | A0A484L212 | 1e-64 | A0A484L212_9ASTE; Uncharacterized protein | ||||
STRING | XP_009610959.1 | 5e-62 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA752 | 23 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50330.1 | 6e-47 | bHLH family protein |