PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000837.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 569aa MW: 63606.3 Da PI: 8.4101

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000837.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.2	1.3e-18	48	146	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwe 77 fY eY+k vGF+vr+s+ kk rng+it r++vCs++g+++ +++ ++ +r+r+++r+gC a++++k+++ g + Itr_sc000837.1_g00008.1 48 FYFEYGKAVGFDVRRSTVKKD-RNGNITVRHLVCSRQGFKQVLRDQcaelevgngvAVGGSRRRTSNRVGCPARFVLKRDNAGSFI 132 9*************99998.8888***********9988899***999999********************* PP FAR1 78 vtkleleHnHelap 91 v+ le H+H+l++ Itr_sc000837.1_g00008.1 133 VHLLEISHTHPLCS 146 **********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-16	48	145	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.631	365	403	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-4	378	405	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
SADTFSPEID CTATYTSNDT KFWAPICDDS ITPYIGQVFG TIEQGEVFYF EYGKAVGFDV 60 RRSTVKKDRN GNITVRHLVC SRQGFKQVLR DQCAELEVGN GVAVGGSRRR TSNRVGCPAR 120 FVLKRDNAGS FIVHLLEISH THPLCSDASR PFLRANRYMD VTHQNFVASC AKANIGPSKS 180 FKLYREFVGD FSNIGATRND FRNMKRDLLA LINGADAQMI IAKFRGRQER CPDFYYDYAV 240 DAEEQLCRLF WTDRFARESY ACFGDVMSFD ATYDTNNLIE FLCHYDGAIE AQRYEQAKLN 300 AACEGHLPKM ITPLAIERHA AAVYTIQLFY EIQNEISKAC FSCRVVSVHQ TGVVKQYVIH 360 DVYGNESKVE YNSDEAAVHC TCKMFEKVGL LCSHGFVALK DAGMEVIPST YVLVRWSRGA 420 CVRSVSRTDG SSNNSVNNHI PPQHKMWVDF HTCLSLAGED QERILMVSNA VQALRESLSV 480 SADITPKRRG KHSVVENFTG TVRVDPVVIR PPVVARNKGR GKRLKGGREV AVTMKKPGGR 540 KCATCGLANG HDSRNCVLRK MNPECEGSS

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

SADTFSPEID CTATYTSNDT KFWAPICDDS ITPYIGQVFG TIEQGEVFYF EYGKAVGFDV  60
RRSTVKKDRN GNITVRHLVC SRQGFKQVLR DQCAELEVGN GVAVGGSRRR TSNRVGCPAR  120
FVLKRDNAGS FIVHLLEISH THPLCSDASR PFLRANRYMD VTHQNFVASC AKANIGPSKS  180
FKLYREFVGD FSNIGATRND FRNMKRDLLA LINGADAQMI IAKFRGRQER CPDFYYDYAV  240
DAEEQLCRLF WTDRFARESY ACFGDVMSFD ATYDTNNLIE FLCHYDGAIE AQRYEQAKLN  300
AACEGHLPKM ITPLAIERHA AAVYTIQLFY EIQNEISKAC FSCRVVSVHQ TGVVKQYVIH  360
DVYGNESKVE YNSDEAAVHC TCKMFEKVGL LCSHGFVALK DAGMEVIPST YVLVRWSRGA  420
CVRSVSRTDG SSNNSVNNHI PPQHKMWVDF HTCLSLAGED QERILMVSNA VQALRESLSV  480
SADITPKRRG KHSVVENFTG TVRVDPVVIR PPVVARNKGR GKRLKGGREV AVTMKKPGGR  540
KCATCGLANG HDSRNCVLRK MNPECEGSS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16839	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-23	FAR1-related sequence 5