PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000835.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 228aa    MW: 24860.1 Da    PI: 4.5909
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000835.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-182777155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++y+GVr +  +g+Wv+eIr p++   r r++lg+f+++e+Aa+a +aa  +l+g
  Itr_sc000835.1_g00006.1 27 CKYRGVRKRN-WGKWVSEIRLPNS---RERIWLGSFDSPEKAARAFDAALFCLRG 77
                             79*****887.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576127No hitNo description
PfamPF008471.4E-102777IPR001471AP2/ERF domain
CDDcd000182.91E-292787No hitNo description
PROSITE profilePS5103222.1552885IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-292886IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-212886IPR016177DNA-binding domain
SMARTSM003802.1E-322891IPR001471AP2/ERF domain
PRINTSPR003678.0E-102940IPR001471AP2/ERF domain
PRINTSPR003678.0E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVKPEKARND GVSSSNSSPS SSSSSSCKYR GVRKRNWGKW VSEIRLPNSR ERIWLGSFDS  60
PEKAARAFDA ALFCLRGKNA NFNFPDNPPD IVDGNSMSLA QIKVAAANFA NSEPPSRGHV  120
SDPSTSLSSS SLHAESPSPS VSDGAVHQAE AEAEGGEMTE TALDHGFLQR FSSLGNANNN  180
VVTDFGYFPE FDDFSNDYYV PPMPMPDTNY VEETYDGFAS QGSFLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1628851472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6783857e-34KF678385.1 Morus notabilis dehydration responsive element binding transcription factor (DREB5G) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196599.11e-124PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLA0A1S3XUX52e-74A0A1S3XUX5_TOBAC; ethylene-responsive transcription factor ERF017-like
STRINGXP_009624342.12e-74(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.19e-42ERF family protein