PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000830.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 269aa    MW: 28222.3 Da    PI: 8.828
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000830.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-202676256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a+++a+++++g+
  Itr_sc000830.1_g00004.1 26 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDNAAREFRGA 76
                             6********.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.0522683IPR001471AP2/ERF domain
SMARTSM003801.5E-372689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-322684IPR001471AP2/ERF domain
CDDcd000183.48E-312683No hitNo description
SuperFamilySSF541712.03E-222684IPR016177DNA-binding domain
PfamPF008476.2E-142675IPR001471AP2/ERF domain
PRINTSPR003671.8E-112738IPR001471AP2/ERF domain
PRINTSPR003671.8E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAPKDKGAAV AVAVPAVDGV RREQVHYRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE  60
EAARAYDNAA REFRGAKAKT NFPLAEERIP LDFCARFDMN RNACEKNGGG CGGGGGGGGG  120
GGNSNHSPSQ SSTVESSSRD GGRFSPAVLV DSSSLLDLNV GGFSAVNHLP YQSRHLRVAP  180
VVAAAAVHPA SHVFYLNALA RAGAITTTPS LNPRFSSPNF HDAAGSTGSG VAQSESDSSS  240
VVETNRDLKP NKDGLILDLD LNLPPPETL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-222684261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-222684564ATERF1
3gcc_A7e-222684564ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU7540233e-58KU754023.1 Ipomoea batatas ERF9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168704.11e-123PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A484LPU23e-94A0A484LPU2_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-26erf domain protein 9