PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000829.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 679aa    MW: 74790.7 Da    PI: 7.688
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000829.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91.1e-24120221199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f k+lt+sd+++ g +++p+ +ae++         ++ +  t+t +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD+
  Itr_sc000829.1_g00012.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfppldysADPPVQ--TVTAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDS 203
                              89****************************996555555..8******************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              +vF   + +++el+v+++r+
  Itr_sc000829.1_g00012.1 204 IVFL--RANNGELFVGIRRA 221
                              ****..4489999*****97 PP
2Auxin_resp109.14.6e-36286369183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                              aa+ a ++++FevvY+Prast+eF+v++++v++a+++++++ mRfkmafetedss++++ +Gtv++v+  dp+rWpnS+Wr+L+
  Itr_sc000829.1_g00012.1 286 AARLAGSGKPFEVVYYPRASTPEFCVRASSVHSAMRIQWCARMRFKMAFETEDSSRISWfMGTVSSVRVNDPIRWPNSPWRLLQ 369
                              67788899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-38114225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-29116221IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-22119220No hitNo description
PfamPF023625.5E-23120221IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38120222IPR003340B3 DNA binding domain
SMARTSM010191.6E-23120222IPR003340B3 DNA binding domain
PfamPF065071.4E-31286369IPR010525Auxin response factor
PROSITE profilePS5174516.597573653IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MKIGEMKELG DKCLDPQLWH ACAGGMVQMP PVNSKVYYFP QGHGEHTLTN VDFSNLTKVS  60
PMILCRVGTV KYLADPETDE VYAKLKLVPI GREHGFDDDV VLGSGANNTA PETAEKSNSF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPPLD YSADPPVQTV TAKDVHGETW KFRHIYRGTP  180
RRHLLTTGWS TFVNQKKLVA GDSIVFLRAN NGELFVGIRR AKKGGIGGSD APQGWSSVAG  240
NYAAYPSFLR EDDNKTIRSS STPKLSSSGG RLRERGRVKP ESVLEAARLA GSGKPFEVVY  300
YPRASTPEFC VRASSVHSAM RIQWCARMRF KMAFETEDSS RISWFMGTVS SVRVNDPIRW  360
PNSPWRLLQV TWDEPDLLQN VKNVSPWMVE LVSNMPIIHM SPFSPPRKKL CLPQDFSLDS  420
QFQIPSFSGN ALGASSPFYC LTDVAAGLQG ARHPQSGQPS LDLHLNNKLN LGLSPPPLRQ  480
VNTDCRIPDG CFIKGQNDNS ENISCLLTMG NSTQKSDTSD EVMTPRFLLF GQPILTEQQM  540
SQNCPTGPVS QIREVQNSPG GKEVNTAELG IDTGHCKVFM ESEDVSQTLD LSVVDSFEEL  600
YKKLAHVFGI ESSEVMNHVL YHDAAGAVKQ IGDDPFSEFV KKAKRLTILR KSGSSSSERI  660
GTSRVPEGDD RRGKMPVIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-78339034388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166507.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLH2BPZ30.0H2BPZ3_SOLLC; Auxin response factor
STRINGSolyc11g069500.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]