PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000828.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 27905.1 Da PI: 6.3724 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.4 | 1.3e-13 | 143 | 244 | 1 | 99 |
EEEE-..-H.HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsd.vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 f+kvl+ d lk++rl +pk++ae++ ++ + ++ +++ d++g++We+ ++ + +s++yvl+ G +++ a++ ++gD+v+ Itr_sc000828.1_g00008.1 143 FEKVLSATDtDLKLSRLFIPKTHAETFfpDLCGRHGMPISILDTEGKQWEFFIRCwpNPSSKTYVLE-GLRDYIIAKKWQAGDIVT 227 67777655515677**********999**444456788***************87355556669999.****************** PP EEE-SS.SEE..EEEEE-S CS B3 82 Fkldgr.sefelvvkvfrk 99 F ++ +++l+++++++ Itr_sc000828.1_g00008.1 228 FC--QTkPGGKLMMGLRKT 244 **..454999999999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-21 | 138 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-17 | 140 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.68E-18 | 141 | 243 | No hit | No description |
SMART | SM01019 | 2.1E-9 | 143 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.9E-10 | 143 | 243 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.305 | 144 | 245 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MIQIEAVLMT TGHSCSLDCC AGVSSAYDEG KFCETFHSND DGWRDCEGCG KLVHCGCIVS 60 FNTYLLLDFG GIMCMECSKI SFILEHFLFL QAYPPNSARN CCMYPASPLP FDDPQQDPSR 120 KNQKESQYCP HAIGPGSIVT PLFEKVLSAT DTDLKLSRLF IPKTHAETFF PDLCGRHGMP 180 ISILDTEGKQ WEFFIRCWPN PSSKTYVLEG LRDYIIAKKW QAGDIVTFCQ TKPGGKLMMG 240 LRKTSTGSAS S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6fas_A | 9e-30 | 139 | 247 | 5 | 112 | B3 domain-containing transcription repressor VAL1 |
6fas_B | 9e-30 | 139 | 247 | 5 | 112 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019183276.1 | 1e-162 | PREDICTED: B3 domain-containing transcription factor VAL3-like isoform X1 | ||||
Swissprot | Q6Z3U3 | 2e-27 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A2G9HK54 | 2e-87 | A0A2G9HK54_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H01903.1.p | 1e-78 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12994 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-29 | HSI2-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|