PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000819.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 526aa MW: 57012.8 Da PI: 6.1627

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000819.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.2	2.7e-17	297	343	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L++l+P + Kl+Ka+iL +A+eY+ksLq Itr_sc000819.1_g00008.1 297 VHNLSERKRRDRINEKMRALQQLIPRC-----NKLDKASILDEAIEYLKSLQ 343 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.38E-18	289	347	No hit	No description
SuperFamily	SSF47459	1.09E-20	290	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.533	293	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-14	297	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-20	297	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-18	299	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MTMNHHCVPE FEMDEDYFPL PMTSPPSAAA LSGAKKSAMV EEEIMELLWQ NGQVVVHTQN 60 HQRSVKRSHG DDGDAAIPVP AARKVGSAAE EEMDTSHQPQ LFMQEDEMAS WLHYPLVDSP 120 LERYLSADLL YSAAVAPPAA PLPPIPPSAS GRTDLRLARL CRPPGPSRAS STVVESNDTP 180 IVPSDYRDSH VADSTAQISG GNLGRGGGTM SETEAAATSM GGKEVTATCE LTVTSSPGSG 240 ACSVSAEKST APATTTEDRK PKGSETDDEG HNTDTDFGSA DNAKKQTSSK RSRAAEVHNL 300 SERKRRDRIN EKMRALQQLI PRCNKLDKAS ILDEAIEYLK SLQLQVQMMS LGHGCGMIPM 360 MFPGIQQYMP AMGIRMGMGM NPPVVPYPPA TPMGGPRFPL PAFPMPPPFA MADPSRIQAS 420 NHTDPMLNSN HPPFPAQTQV TPSMVSCSTS LMLNIHLFLL GVMRETYSHI MWVWSGTRWW 480 NILIRASPAA AKIVENPTTL QCGKLPVLFL IHHLSSVNAV DSQADQ

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MTMNHHCVPE FEMDEDYFPL PMTSPPSAAA LSGAKKSAMV EEEIMELLWQ NGQVVVHTQN  60
HQRSVKRSHG DDGDAAIPVP AARKVGSAAE EEMDTSHQPQ LFMQEDEMAS WLHYPLVDSP  120
LERYLSADLL YSAAVAPPAA PLPPIPPSAS GRTDLRLARL CRPPGPSRAS STVVESNDTP  180
IVPSDYRDSH VADSTAQISG GNLGRGGGTM SETEAAATSM GGKEVTATCE LTVTSSPGSG  240
ACSVSAEKST APATTTEDRK PKGSETDDEG HNTDTDFGSA DNAKKQTSSK RSRAAEVHNL  300
SERKRRDRIN EKMRALQQLI PRCNKLDKAS ILDEAIEYLK SLQLQVQMMS LGHGCGMIPM  360
MFPGIQQYMP AMGIRMGMGM NPPVVPYPPA TPMGGPRFPL PAFPMPPPFA MADPSRIQAS  420
NHTDPMLNSN HPPFPAQTQV TPSMVSCSTS LMLNIHLFLL GVMRETYSHI MWVWSGTRWW  480
NILIRASPAA AKIVENPTTL QCGKLPVLFL IHHLSSVNAV DSQADQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	301	306	ERKRRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165861.1	0.0	PREDICTED: transcription factor PIF1-like isoform X2
TrEMBL	A0A328D9R4	1e-144	A0A328D9R4_9ASTE; Uncharacterized protein
STRING	XP_009591396.1	1e-120	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4059	23	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.3	2e-54	phytochrome interacting factor 3-like 5