PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000804.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 862aa MW: 95860.4 Da PI: 7.5823

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000804.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.4	7e-29	573	623	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l+ l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Itr_sc000804.1_g00013.1 573 DKTITLQILQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 623 589**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.2	557	643	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-25	575	623	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.08E-24	773	859	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.0E-24	775	854	No hit	No description
SMART	SM00666	4.8E-26	775	858	IPR000270	PB1 domain
PROSITE profile	PS51745	27.948	775	858	IPR000270	PB1 domain
CDD	cd06407	2.04E-40	776	856	No hit	No description
Pfam	PF00564	4.2E-19	777	854	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence Send to blast
MDGGLCPSAT LLNVSSSDSF MDLDYMNELL CWVERSEGSD VLFHHSPPTA SYMWPVLEAT 60 NNNGQEERQR ASLLPENLSG FQYRTAISPS GQSRRCLVEG SERGWWVCPK TANSITDRLV 120 RAVEYINEFS RDKNVLIQIW VPVSKGGKCV LTTSGQPFQL NKNCPQLAHY RDISENFQFP 180 AEEDSNESSG LPGRVFLDKL PEWTPDVQFF KKDEYPRVGH AQQFDVRGSL AVPVFEQSGC 240 SCLGVIEVVL TTQKLKYLPQ LESVCKALEA VNLRGSILPN ARNAKACDLT YQAVLGEIHD 300 VFRSACETHR LPLAQTWVPC IQQGKEGCRH SDDNLIHCVS TVDSACYVAD PHVRGFHEAC 360 SEHHLLKGQG LVGRAFMTNQ ACFSADVMSS SKAEYPLAHY AKMFGLQASV AIRLKSVSIC 420 SAEFVLEFFL PRNCISPEEH KRMLTSLSII IQNVCQTLRV VTDQELQQET SGFTFSEEGL 480 KLTRNLPDGP YEEEGLPGNS QQTDCHESRG SVSAFENGPS EVVLKKRCPE LRLQLNECVP 540 GSGLAINRNN RASSACNSRG VAKRGDKKRM KTDKTITLQI LQQYFAGSLK DAAKSIGVCP 600 TTLKRICRQH GIKRWPSRKI KKVGHSLQKI QHVIDSVQGV SGGLQIESFY SSFPELVSPN 660 SGSNQFKNLE SHEQPRQQHE GDSTSPRAAA AAVTPSSSCS QSSSSSQCCS TGRQVFRADL 720 AGIKRVKSAA ELHSSSNELK ALPRCQSHAS LIQRPPSRFL PRTKGGGDCR PREDVLRVKV 780 SFGEEKIRLR VHNTWGYEDL LNEIARRFGM DDSTGLQLKY LDDDSEWVLL TCDADLQECF 840 DVCRSSQNQT IKLTFHRVPQ HC

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence Send to blast

MDGGLCPSAT LLNVSSSDSF MDLDYMNELL CWVERSEGSD VLFHHSPPTA SYMWPVLEAT  60
NNNGQEERQR ASLLPENLSG FQYRTAISPS GQSRRCLVEG SERGWWVCPK TANSITDRLV  120
RAVEYINEFS RDKNVLIQIW VPVSKGGKCV LTTSGQPFQL NKNCPQLAHY RDISENFQFP  180
AEEDSNESSG LPGRVFLDKL PEWTPDVQFF KKDEYPRVGH AQQFDVRGSL AVPVFEQSGC  240
SCLGVIEVVL TTQKLKYLPQ LESVCKALEA VNLRGSILPN ARNAKACDLT YQAVLGEIHD  300
VFRSACETHR LPLAQTWVPC IQQGKEGCRH SDDNLIHCVS TVDSACYVAD PHVRGFHEAC  360
SEHHLLKGQG LVGRAFMTNQ ACFSADVMSS SKAEYPLAHY AKMFGLQASV AIRLKSVSIC  420
SAEFVLEFFL PRNCISPEEH KRMLTSLSII IQNVCQTLRV VTDQELQQET SGFTFSEEGL  480
KLTRNLPDGP YEEEGLPGNS QQTDCHESRG SVSAFENGPS EVVLKKRCPE LRLQLNECVP  540
GSGLAINRNN RASSACNSRG VAKRGDKKRM KTDKTITLQI LQQYFAGSLK DAAKSIGVCP  600
TTLKRICRQH GIKRWPSRKI KKVGHSLQKI QHVIDSVQGV SGGLQIESFY SSFPELVSPN  660
SGSNQFKNLE SHEQPRQQHE GDSTSPRAAA AAVTPSSSCS QSSSSSQCCS TGRQVFRADL  720
AGIKRVKSAA ELHSSSNELK ALPRCQSHAS LIQRPPSRFL PRTKGGGDCR PREDVLRVKV  780
SFGEEKIRLR VHNTWGYEDL LNEIARRFGM DDSTGLQLKY LDDDSEWVLL TCDADLQECF  840
DVCRSSQNQT IKLTFHRVPQ HC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019190069.1	0.0	PREDICTED: protein NLP4-like isoform X2
Swissprot	Q9SFW8	0.0	NLP5_ARATH; Protein NLP5
TrEMBL	A0A1U7UY38	0.0	A0A1U7UY38_NICSY; protein NLP4-like
STRING	XP_009759077.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein