PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000802.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 140aa MW: 15878.2 Da PI: 11.2447 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.9 | 2.9e-14 | 38 | 83 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 kG+r +k +g+WvAeIrd ++r +lg++ t+ Aa+a++ +l Itr_sc000802.1_g00002.1 38 NKGIRMRK-WGKWVAEIRDT-----NTRLWLGSYYTPVAAARAYDVVLFYLC 83 59***999.**********5.....5*******************9887775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.2E-25 | 36 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.755 | 37 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-17 | 38 | 93 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.7E-6 | 38 | 49 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.12E-20 | 39 | 93 | No hit | No description |
Pfam | PF00847 | 2.2E-8 | 39 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-24 | 39 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-6 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MNNKKLARTA GGGDGVGASR GGGAEKKKRR PKQKNLYNKG IRMRKWGKWV AEIRDTNTRL 60 WLGSYYTPVA AARAYDVVLF YLCGPRAKLN FPDCVVGDGH HRQLTPKEIQ NRATRVGYWV 120 DAIRRGLQGH RQLTQKEIQN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 25 | 29 | KKKRR |
2 | 25 | 30 | KKKRRP |
3 | 25 | 32 | KKKRRPKQ |
4 | 26 | 31 | KKRRPK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339868.1 | 1e-35 | PREDICTED: ethylene-responsive transcription factor RAP2-10-like | ||||
Swissprot | Q9FH94 | 4e-29 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A0V0INJ8 | 2e-34 | A0A0V0INJ8_SOLCH; Putative ethylene-responsive transcription factor RAP2-10-like | ||||
TrEMBL | M0ZXP8 | 2e-34 | M0ZXP8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400010228 | 4e-35 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 1e-31 | DREB and EAR motif protein 2 |
Publications ? help Back to Top | |||
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