PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000795.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LFY
Protein Properties Length: 416aa    MW: 45976.9 Da    PI: 6.9894
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000795.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY6411.8e-19513941386
                  FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap....leaaaaaaarklr..........eleelfkayGvryltvakiaelG 72 
                              mdp+afs+slfkw+praa+ +pp+rlle aa++++p    ++a+ +a+++++r          +leelf+ayG+ry+t+akiaelG
  Itr_sc000795.1_g00010.1   1 MDPDAFSSSLFKWEPRAAM-PPPSRLLEAAAAHPPPqlhaAAAQPSASSYSVRprpelglglgGLEELFQAYGIRYYTAAKIAELG 85 
                              9**************9876.77889988888887775543333334444556699******************************* PP

                  FLO_LFY  73 ftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeg.lseepvqe. 156
                              ftv+tL+dmk++e+dd+m+sls+ifr+dllvGeryGikaavraerrrleeee   +rr+lls d ++aldalsqe+ lsee vq+ 
  Itr_sc000795.1_g00010.1  86 FTVNTLLDMKEDEIDDMMTSLSHIFRWDLLVGERYGIKAAVRAERRRLEEEE--LRRRHLLSGDGTNALDALSQEVgLSEEGVQQh 169
                              **************************************************88..89999****************65****99995 PP

                  FLO_LFY 157 ekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgeva 242
                              ekea+gsgg+g g++e+vaa+ k +++++k+    k+ r    +  +ee+ ++e +e+++e ++g + +erqrehPfivtepgeva
  Itr_sc000795.1_g00010.1 170 EKEAVGSGGGG-GAWEVVAAAGKAKQRRRKSV--GKAARTGGGS--MEEEYETEGQEEDEEGDGGGGISERQREHPFIVTEPGEVA 250
                              66778887777.99****99976555555444..3444433333..34556666666666777777778***************** PP

                  FLO_LFY 243 rgkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafke 328
                              rgkknGLDYLf+LyeqCrefL+qvq+iakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafke
  Itr_sc000795.1_g00010.1 251 RGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKE 336
                              ************************************************************************************** PP

                  FLO_LFY 329 rgenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                              rgenvGawrqacykplvaiaa q+wdida+fnahprLsiWYvPtkLrqLCh+erskas
  Itr_sc000795.1_g00010.1 337 RGENVGAWRQACYKPLVAIAALQAWDIDAIFNAHPRLSIWYVPTKLRQLCHAERSKAS 394
                              *******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016987.6E-2011393IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDPDAFSSSL FKWEPRAAMP PPSRLLEAAA AHPPPQLHAA AAQPSASSYS VRPRPELGLG  60
LGGLEELFQA YGIRYYTAAK IAELGFTVNT LLDMKEDEID DMMTSLSHIF RWDLLVGERY  120
GIKAAVRAER RRLEEEELRR RHLLSGDGTN ALDALSQEVG LSEEGVQQHE KEAVGSGGGG  180
GAWEVVAAAG KAKQRRRKSV GKAARTGGGS MEEEYETEGQ EEDEEGDGGG GISERQREHP  240
FIVTEPGEVA RGKKNGLDYL FHLYEQCREF LIQVQNIAKE RGEKCPTKVT NQVFRYAKKA  300
GASYINKPKM RHYVHCYALH CLDEEASNAL RRAFKERGEN VGAWRQACYK PLVAIAALQA  360
WDIDAIFNAH PRLSIWYVPT KLRQLCHAER SKASAPTSSS VSVSIPATAC SHLPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1082333923162PROTEIN LEAFY
2vy2_A1e-1082333923162PROTEIN LEAFY
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198QRRRKS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that act to specify determinacy in the progenitor cells for both flowers and leaves.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168834.10.0PREDICTED: LOW QUALITY PROTEIN: floricaula/leafy homolog 2
SwissprotQ405050.0FL2_TOBAC; Floricaula/leafy homolog 2
TrEMBLA0A328DW600.0A0A328DW60_9ASTE; Uncharacterized protein
STRINGXP_009780578.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66682333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-108floral meristem identity control protein LEAFY (LFY)