PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000795.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 1870aa    MW: 212285 Da    PI: 8.5202
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000795.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-1916781727255
                      AP2    2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55  
                               +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  Itr_sc000795.1_g00005.1 1678 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDEAALRFKG 1727
                               7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF141112.2E-3340176IPR025558Domain of unknown function DUF4283
PfamPF143923.2E-17178226IPR025836Zinc knuckle CX2CX4HX4C
SuperFamilySSF562193.01E-36343570IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:3.60.10.103.0E-15343570IPR005135Endonuclease/exonuclease/phosphatase
PfamPF033724.0E-12345564IPR005135Endonuclease/exonuclease/phosphatase
SuperFamilySSF566721.13E-167431062No hitNo description
PROSITE profilePS5087813.0378131083IPR000477Reverse transcriptase domain
CDDcd016506.90E-578271094No hitNo description
PfamPF000784.8E-368321081IPR000477Reverse transcriptase domain
PfamPF139666.2E-2113541438IPR026960Reverse transcriptase zinc-binding domain
PfamPF134561.5E-515401592No hitNo description
Gene3DG3DSA:3.30.730.108.0E-3216771736IPR001471AP2/ERF domain
CDDcd000183.81E-1816781736No hitNo description
SuperFamilySSF541714.97E-2116781736IPR016177DNA-binding domain
SMARTSM003804.5E-3816781741IPR001471AP2/ERF domain
PfamPF008473.3E-1316781727IPR001471AP2/ERF domain
PROSITE profilePS5103224.97416781735IPR001471AP2/ERF domain
PRINTSPR003674.4E-1016791690IPR001471AP2/ERF domain
PRINTSPR003674.4E-1017011717IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1870 aa     Download sequence    Send to blast
MADSDIVGMC AQLTLADIDD DDVSMQLPDV PVGQAEVNEE FYAVGRLVTD KPIKFQYFQD  60
TMAGVWRPGF GVTMRQLQPH RFLIRFYNDD DITRILEDGP WTFEQSLLVL RRLLPAEDPE  120
AMALDKAEFW VQIHNLPVGF RSEAVVSAIG AFIGTLVKTD ERNFDGSMHT FYRVRVAIDL  180
ARPLKKQMKL KRDSGSWVVI DFKYERLPTF CFLCGIIGHG ERFCHKVPRR ADIKADKPYG  240
PGLRAGTRRV VPSAGHRWVA PASTAERRSW VAPAHEGTDV CDAKGKGVQV SDGDGSPHRD  300
NDNVQTCDPA TEHSEPSTGS EIVSVEQKKR KVAGEGGSAG SVVIAWNCRG LGNPTAVRVL  360
ADMVRTKRPN IVFLMETFLN KQKLEPIRVQ LGFGNMLVVD AQGHRGGLAL LWHENVGVEI  420
TTYSQNHIYA TVSLDAGVEF RLTGFYGFPE RQRRRESWDL LRHLSELSSL PWLVMGDFND  480
LLDQTEKRGR VPHPEWLING FRNAVADCGL RDFPFLGNQF TWERSRGTPA MVEEKLDRIL  540
VTDTWHSLFE GAKAWSFVCP YSDHLPIMIT PEVVRRAHRR SRFCFDNMWL KEIACREIVE  600
HSWDKTLGLD VLTRITVCSH DIWRWGRVYN KDFLRKIDSK KSKLESLRMR RDPVGIADYA  660
RTEKELMFLL EQQHLFWKQR AKEHWWRGGD TNTKFFHNSV KMRRRRNKVV RLKNDEGIWV  720
DNADEIGSVM VGYFQDLFTS QAGEMEEVVS CIKSQITAQD NANLTCPVSA EEVRKAVFQM  780
HPDKSPGPDG FGPGFYQHFW DVVGDEVTMF CRRFVESGRL PDQINNTFVV LIPKKTTPES  840
MKDLRPIALC NVLYKIAAKV CANRMKPVLD GIVSNAQSAF VPGRLITDNI MLAYEAHHYL  900
KRKTQGKEGV AALKVDMSKA YDRVEWCFVK AVMAKMGFGQ RWIDIIFETI STVKYHILHE  960
QNQLGPIVPG RGLRQGDPLS PYLFLFVAEG LSALIDDRMR RGYLHGLSVA RGAPPISHLL  1020
FADDCFLFLR ANREESLHMK QVLDSYSVAS GQKINFDKSL VCFSTNVQQH TRSEVINILG  1080
VSQGDTTGKY LGLPSLVGRN KKAILGFIKD KILGRVRSWN SRFLSRAGRE VLLKNVLQAM  1140
PCFTMMVFLL PVGLCREIET VLNKYWWTGS VGDGKGLKWK SWTGLSIPKE KGGMGFRRLR  1200
EMNLALLGKQ AWRLVTRPDS LVARVYKSRY YPHCSFFEAT EGSNPSFIWR GMLEVQKVVR  1260
LGCRRCIGDG NNTVIGRDPW LPTEVDPFVS TTLHDSVKNA PVSLLFNAQR TGWDEEYVRE  1320
VFNDRDANLI LNIPLSLRRP PDAWTWFWEA KGNYSVKSCY RMLIGEIQDT YDWYKIWRLH  1380
VPPKVKVFCW QLASSFLPTR DALLTKHIPC SQVCHMCRGA DETAYHLFVD CPEVASIWEG  1440
LGLPLLVHEQ GNFVSWFFGL LSSLNAEKLS RVVMLCWGVW CSRNELVWKG VPFVRNYVIN  1500
SALSFWENWR EAQERCAAHN IGSSSEESWR RPDVGRIKLN TDIGFDEQNN AMGFGWVLRD  1560
DTGQFLACKG MRLTGRLDVT VAEAMCIREA LRPFSSDEAE EKEGGGGATA ESIFPVYSAR  1620
SLHDMTAMVS ALSQVIGNNN TTTATSQPNP TLHGNSLLPQ TQQPNIQQQE AGGQRKRHYR  1680
GVRQRPWGKW AAEIRDPKKA ARVWLGTFDT AEAAALAYDE AALRFKGNKA KLNFPERVQG  1740
KTDFGYLAAT TLQQQHQFHA TAGASVLSPS HHHFSLPQYH HPNLDDHYAA AQAQAQHYAT  1800
LHGQQGPTTN DNNNYLNLFP NNYEVSMFRP FVSQQQFPFS QFPYGTTSSS ASGDASEDNW  1860
EEFDIKNVRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2316771739467ATERF1
3gcc_A2e-2316771739467ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150943.10.0PREDICTED: uncharacterized protein LOC109147742
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.13e-38ERF family protein