PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000793.1_g00021.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 352aa MW: 40225.8 Da PI: 5.9883

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000793.1_g00021.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.2	5.2e-56	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeelv +yLk+k++g+++el +vi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWk Itr_sc000793.1_g00021.1 9 LPPGFRFHPTDEELVAYYLKRKINGHRIEL-DVIPEVDLYKCEPWDLPgKaLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWK 93 79**************************.9************6434555777************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd++v s + ++vg+kktLv+++grap+g +tdW+mheyrl Itr_sc000793.1_g00021.1 94 ATGKDRKVNS-EMRAVGMKKTLVYHRGRAPHGARTDWIMHEYRL 136 *****9.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.24E-64	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	61.097	9	159	IPR003441	NAC domain
Pfam	PF02365	7.2E-30	10	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MEAMATVSLP PGFRFHPTDE ELVAYYLKRK INGHRIELDV IPEVDLYKCE PWDLPGKALL 60 PSKDLEWYFF SPRDRKYPNG SRTNRATKAG YWKATGKDRK VNSEMRAVGM KKTLVYHRGR 120 APHGARTDWI MHEYRLDERE CETRSGLQEA YALCRIFKKS LNGLKIGENS GADRSSYDYE 180 TESSTYAMAA PSSSATCSSP MTAAAGDGSL FNFPGGVSSD HRYWMQFLSS DDQAFRFHNN 240 PSHRFMLPPV EFHQSSFVPE YANHDEILSV HHQHQHQAAS GFSDDYFPFV PQNNEELGDM 300 DSSLITEQLN QDDQQNVGEE LRSDRMVENL RWVGVLDKDI EKVILDHSAI LV

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MEAMATVSLP PGFRFHPTDE ELVAYYLKRK INGHRIELDV IPEVDLYKCE PWDLPGKALL  60
PSKDLEWYFF SPRDRKYPNG SRTNRATKAG YWKATGKDRK VNSEMRAVGM KKTLVYHRGR  120
APHGARTDWI MHEYRLDERE CETRSGLQEA YALCRIFKKS LNGLKIGENS GADRSSYDYE  180
TESSTYAMAA PSSSATCSSP MTAAAGDGSL FNFPGGVSSD HRYWMQFLSS DDQAFRFHNN  240
PSHRFMLPPV EFHQSSFVPE YANHDEILSV HHQHQHQAAS GFSDDYFPFV PQNNEELGDM  300
DSSLITEQLN QDDQQNVGEE LRSDRMVENL RWVGVLDKDI EKVILDHSAI LV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-58	2	159	10	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-58	2	159	10	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-58	2	159	10	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-58	2	159	10	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-58	2	159	13	168	NAC domain-containing protein 19
3swm_B	1e-58	2	159	13	168	NAC domain-containing protein 19
3swm_C	1e-58	2	159	13	168	NAC domain-containing protein 19
3swm_D	1e-58	2	159	13	168	NAC domain-containing protein 19
3swp_A	1e-58	2	159	13	168	NAC domain-containing protein 19
3swp_B	1e-58	2	159	13	168	NAC domain-containing protein 19
3swp_C	1e-58	2	159	13	168	NAC domain-containing protein 19
3swp_D	1e-58	2	159	13	168	NAC domain-containing protein 19
4dul_A	1e-58	2	159	10	165	NAC domain-containing protein 19
4dul_B	1e-58	2	159	10	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019172336.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	6e-94	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A1S4BLJ4	1e-128	A0A1S4BLJ4_TOBAC; NAC domain-containing protein 86-like
STRING	XP_009625360.1	1e-129	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1495	23	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-102	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]