PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000793.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 171aa MW: 18794.3 Da PI: 7.9516 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 10 | 61 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y GVr ++ +g+++AeIrd ++ g kr++lg+f ae+Aa a+++a+++++g Itr_sc000793.1_g00001.1 10 SNYIGVRKRP-WGKYAAEIRDSTQSG--KRVWLGTFNNAEDAALAYDQAALAMRG 61 5699******.**********55444..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.94E-29 | 10 | 69 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-22 | 10 | 71 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.3E-34 | 11 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 11 | 69 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 11 | 61 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.549 | 11 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-12 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-12 | 51 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MEAHTSTKTS NYIGVRKRPW GKYAAEIRDS TQSGKRVWLG TFNNAEDAAL AYDQAALAMR 60 GTSACLNFPP EVVRELLEKV DCKEGMSVAA ALKEKHRKRT RRGKGNSPSC KEAEEEGNNG 120 VLVFEDLGSD LLDELLSVTS SSCMFSPGPV TLADHKEINQ LRLPIADRLK P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-26 | 12 | 72 | 15 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019185294.1 | 2e-94 | PREDICTED: ethylene-responsive transcription factor 15-like | ||||
Swissprot | A0A3Q7I5Y9 | 7e-41 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1S3ZJ47 | 6e-51 | A0A1S3ZJ47_TOBAC; ethylene-responsive transcription factor 15-like | ||||
STRING | XP_009804882.1 | 1e-50 | (Nicotiana sylvestris) | ||||
STRING | XP_009609581.1 | 8e-51 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 3e-25 | ethylene-responsive element binding factor 15 |
Publications ? help Back to Top | |||
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