PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000792.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 281aa MW: 30626.6 Da PI: 6.3409

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000792.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.5	3.5e-14	108	149	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+++E+ ll+++++++G g+W+ +a+++g +++ qc+++++ Itr_sc000792.1_g00001.1 108 DWSADEEILLLEGIEMHGLGNWSDVAEHVG-TKSKQQCVDHYN 149 5***************************.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00291	1.0E-11	45	89	IPR000433	Zinc finger, ZZ-type
PROSITE profile	PS50135	11.105	45	92	IPR000433	Zinc finger, ZZ-type
Pfam	PF00569	3.1E-10	46	89	IPR000433	Zinc finger, ZZ-type
SuperFamily	SSF57850	2.59E-15	48	112	No hit	No description
CDD	cd02335	3.04E-25	49	97	No hit	No description
PROSITE pattern	PS01357	0	51	78	IPR000433	Zinc finger, ZZ-type
SuperFamily	SSF46689	3.51E-13	101	155	IPR009057	Homeodomain-like
PROSITE profile	PS51293	22.576	104	156	IPR017884	SANT domain
SMART	SM00717	8.9E-12	105	154	IPR001005	SANT/Myb domain
Pfam	PF00249	8.9E-14	108	149	IPR001005	SANT/Myb domain
CDD	cd00167	2.59E-13	109	149	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-10	109	151	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGRSRAVPHS ADDDPSQSRS KRKRTSQNVE SLETGTAGQG LSDGKKASYH CNYCNKDISG 60 KIRIKCAVCS DFDLCIECFS VGAEVQPHKS NHPYRVMDNL SFPLICPDWS ADEEILLLEG 120 IEMHGLGNWS DVAEHVGTKS KQQCVDHYNA IYMNSPCFPL PDMSHVMGKN REELLAMAKE 180 LGELKKGYTA VGDVNVKEET PFLGRVKMED QRKEASTGRA SSCLASADVV PGGAPTGAGK 240 RVSMGPSKDG HDGIKLEGMN CSFLEFVSEV YCFGALHLKS D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6cw3_E	2e-38	49	164	5	120	Transcriptional adapter 2
6cw3_G	2e-38	49	164	5	120	Transcriptional adapter 2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019193880.1	0.0	PREDICTED: transcriptional adapter ADA2-like
Swissprot	Q75LL6	1e-100	TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBL	A0A328D8U6	1e-146	A0A328D8U6_9ASTE; Transcriptional adapter
STRING	XP_009803647.1	1e-130	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2447	12	15

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]