PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000787.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GATA | ||||||||
Protein Properties | Length: 215aa MW: 23310.3 Da PI: 7.4133 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.9 | 1.9e-20 | 112 | 146 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++ Itr_sc000787.1_g00009.1 112 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 146 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.9E-19 | 106 | 158 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-14 | 108 | 147 | No hit | No description |
PROSITE profile | PS50114 | 13.784 | 110 | 142 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.0E-17 | 110 | 146 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.17E-13 | 111 | 143 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 112 | 137 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.5E-18 | 112 | 146 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MMHRCSSSCS CGMYNQSSND YSAGFSMFFS SPPANQNHQY YYEEAPDYDQ NIYSSSSSSS 60 VDCTLSLGTP STRLTSANER PPSESRRSLS SSSHKSGRGG AAASDPLVTR RCANCDTTST 120 PLWRNGPRGP KSLCNACGIR FKKEERRASA AAAAAAAANG GGAGGMDMMH NSWAHHTQMP 180 YNNYSSSAYG NEYGYMEDDD RDSAFLSWRL NVHCS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019154709.1 | 1e-102 | PREDICTED: GATA transcription factor 19-like | ||||
Swissprot | Q9ZPX0 | 6e-37 | GAT20_ARATH; GATA transcription factor 20 | ||||
TrEMBL | A0A1S4CIH2 | 9e-66 | A0A1S4CIH2_TOBAC; GATA transcription factor 19-like | ||||
STRING | XP_009603282.1 | 1e-65 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3818 | 23 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 2e-30 | GATA transcription factor 19 |
Publications ? help Back to Top | |||
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