PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000781.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 297aa    MW: 34724.3 Da    PI: 5.5396
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000781.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.34.5e-1751413128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyat.gkrknratk...... 79 
                               G+rF+P+d el++      ++g   +++ +vi++ d+y   ePw+L  + +  +k  yfF++ ++k+++ gk ++r ++      
  Itr_sc000781.1_g00011.1   5 LGYRFQPSDYELLMILF-YYLTGMGwCDT-NVIRHEDLYGDkEPWELF-RSDWPDKYQYFFTQLKRKSKSsGKASSRFARrvgksp 87 
                              59***********6655.55555552666.99******97549****5.666678899***9998887742666666322234455 PP

                      NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                               g+W+ + k k++++k +g+l g k+++ +     ++++++ +  +W+++e+ l
  Itr_sc000781.1_g00011.1  88 GGTWHGQDKGKPIVHKeSGALLGYKRSFLYRnkdkDKDEKSNQDRKWLLKEFYL 141
                              9*************9967888*********9444323444445668*****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.3953172IPR003441NAC domain
SuperFamilySSF1019415.23E-205172IPR003441NAC domain
PfamPF023655.4E-106140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEKCLGYRFQ PSDYELLMIL FYYLTGMGWC DTNVIRHEDL YGDKEPWELF RSDWPDKYQY  60
FFTQLKRKSK SSGKASSRFA RRVGKSPGGT WHGQDKGKPI VHKESGALLG YKRSFLYRNK  120
DKDKDEKSNQ DRKWLLKEFY LNDDAALMKA METSYPILEN AKDFVLCRLQ RKKRAGSEPQ  180
EIKDVPVETI LQILRGGAAD CTATKTLPPP LPPTEEKIDS YDYINPKEEI LAQPAVVQQS  240
MQGENIDMGL LFDEGPQLAS IQQHLMEDED DDYIDRDYRY RSYYEQFSQE ILQPSLR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179039.12e-59PREDICTED: uncharacterized protein LOC109174249
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.16e-08Arabidopsis NAC domain containing protein 87