PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000772.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 123aa    MW: 13423.7 Da    PI: 10.567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000772.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.7e-161261255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             +y GVr++k +g+Wv+eIr p         r +lg++ tae Aa a++ a  +l++
  Itr_sc000772.1_g00014.1 12 KYLGVRRRK-WGKWVSEIRIP-----AtaERLWLGTYATAEAAAVAHDVAYICLRQ 61
                             899***998.**********9.....347***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-251172IPR001471AP2/ERF domain
PROSITE profilePS5103220.8111271IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-171272IPR016177DNA-binding domain
SMARTSM003806.0E-261277IPR001471AP2/ERF domain
CDDcd000187.28E-171273No hitNo description
PfamPF008477.3E-91260IPR001471AP2/ERF domain
PRINTSPR003676.7E-91324IPR001471AP2/ERF domain
PRINTSPR003676.7E-93551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MMMKSKEVMK RKYLGVRRRK WGKWVSEIRI PATAERLWLG TYATAEAAAV AHDVAYICLR  60
QPATLDKLNF PAATLTATAG VPRGMSPVAV QKAASDAGMA VDATTKFKEI GVAENPNFFV  120
HGN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163534.19e-63PREDICTED: ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I82e-37ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A1S3XV092e-41A0A1S3XV09_TOBAC; ethylene-responsive transcription factor ERF020-like
TrEMBLA0A1U7VLT92e-41A0A1U7VLT9_NICSY; ethylene-responsive transcription factor ERF020-like
STRINGXP_009767328.13e-42(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94942028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.13e-28ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]