PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000759.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 511aa MW: 57497.7 Da PI: 6.307 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 265.7 | 1.6e-81 | 138 | 509 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl... 83 lv+lLl++ e +s ++ +la+ +++r +as +g+p+qRla++f+eAL +r+ r++ ++ ++ ++ ++ ++s +l+ + Itr_sc000759.1_g00010.1 138 LVHLLLAAGEELSRRQYHLATGFISRCLWTASDSGTPVQRLAFHFAEALTERIERETG-RFRGVSEERLARCRESMALSCNPAvla 222 689****************************************************443.344443333333333333333222434 PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLak 167 ++ P+ ++ +++ qaI e v++++++H +D++i G+QW L+qaLa++ +++p ++R+T++g ++e++ee g+rL++ Itr_sc000759.1_g00010.1 223 SHQGLPFGQVIQFAGIQAIIERVKNARKIHLVDINIRSGIQWTILMQALAEQHDSSPieRIRLTAIGV---AEREKMEECGKRLQS 305 78899**********************************************997777679********...579************ PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 fA++l++pf f+++ ++l+d++ + +++ +E++aV + l ++ +++ +l+ +++ +++l+P v+vv+e ea+hns+sF Itr_sc000759.1_g00010.1 306 FADSLNLPFCFHTVFLSDLKDFREDLVQIEDEEVVAVLASTVLRTMIARPYCLDG----LMRGIRGLRPAVMVVAEVEANHNSPSF 387 ***********************************************99999988....*************************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 +rf+eal ++ a fd+l+ l r++ r+++E +g+ i+n+va+eg+er+++ + e Wr+ + ++ +++++ls++ ++qa+l Itr_sc000759.1_g00010.1 388 INRFVEALFFFGAYFDCLDDCLDRDDPCRRTIEGLHFGEGIRNMVAAEGEERFAKSVKIEVWRSYFARFAMEEMQLSDSSVCQANL 473 ************************************************************************************** PP GRAS 340 llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +k++ ++ +++++ + l++gWk+ p+ sv++W+ Itr_sc000759.1_g00010.1 474 VGKKFGnGNSCTLDSSGKGLIFGWKGTPMHSVTCWK 509 ******88889999*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.388 | 112 | 488 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.5E-79 | 138 | 509 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MIMHDWFEME ECDDFDSLFA GTKKIEHLIE AQNQMPSPNP QVSEPKPHQT PFSSACFQIL 60 KCYGRFFKDR SSVITSKTDH IHARGAGGKL SVAEILKLAG ERYIQFFTQN GDGFSAFFHP 120 YASALSGISV DDIRDVELVH LLLAAGEELS RRQYHLATGF ISRCLWTASD SGTPVQRLAF 180 HFAEALTERI ERETGRFRGV SEERLARCRE SMALSCNPAV LASHQGLPFG QVIQFAGIQA 240 IIERVKNARK IHLVDINIRS GIQWTILMQA LAEQHDSSPI ERIRLTAIGV AEREKMEECG 300 KRLQSFADSL NLPFCFHTVF LSDLKDFRED LVQIEDEEVV AVLASTVLRT MIARPYCLDG 360 LMRGIRGLRP AVMVVAEVEA NHNSPSFINR FVEALFFFGA YFDCLDDCLD RDDPCRRTIE 420 GLHFGEGIRN MVAAEGEERF AKSVKIEVWR SYFARFAMEE MQLSDSSVCQ ANLVGKKFGN 480 GNSCTLDSSG KGLIFGWKGT PMHSVTCWKF S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-36 | 156 | 509 | 21 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019188249.1 | 0.0 | PREDICTED: DELLA protein GAIP-like | ||||
TrEMBL | A0A1S4A0M9 | 0.0 | A0A1S4A0M9_TOBAC; DELLA protein RGL1-like | ||||
STRING | XP_009628660.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-47 | RGA-like 1 |