PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000753.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 160aa    MW: 18642.5 Da    PI: 9.4476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000753.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19107157256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                              +++GVr+++ +g+Wv+eIrdp+    r  r +lg ++t eeAa  +++a++kl+g+
  Itr_sc000753.1_g00001.1 107 KFRGVRQRP-WGKWVVEIRDPT----ReVRLWLGIYDTVEEAAMVYDNAALKLRGP 157
                              89*******.**********83....47**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-24106158IPR001471AP2/ERF domain
SMARTSM003803.2E-21107160IPR001471AP2/ERF domain
CDDcd000186.80E-24107159No hitNo description
PROSITE profilePS5103220.574107160IPR001471AP2/ERF domain
PfamPF008471.6E-12107156IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17107158IPR016177DNA-binding domain
PRINTSPR003673.7E-9108119IPR001471AP2/ERF domain
PRINTSPR003673.7E-9130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MAPPIXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXTDLK KVRITDLDAT DTSSDEEELY  60
ERRRVRRYIH EINIETTINI DAVKSGKKRP VAEVKEAPVP AVNRVRKFRG VRQRPWGKWV  120
VEIRDPTREV RLWLGIYDTV EEAAMVYDNA ALKLRGPDSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-16106156455ATERF1
3gcc_A9e-16106156455ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1719882e-79GU171988.1 Ipomoea batatas microsatellite Stv_Ipb_1659 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177798.12e-62PREDICTED: ethylene-responsive transcription factor CRF1-like
SwissprotQ9SUE32e-34CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A1S4DC783e-43A0A1S4DC78_TOBAC; ethylene-responsive transcription factor CRF4-like
STRINGXP_009624576.15e-44(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-27cytokinin response factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]