PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000748.1_g00012.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 422aa MW: 45179.6 Da PI: 10.2709

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000748.1_g00012.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	190	212	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+Cg++Fs ++ ++H + H Itr_sc000748.1_g00012.1 190 SCPKCGEHFSKWDAVESHHLSkH 212 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	191	212	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	7.58E-21	214	421	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.1E-11	221	398	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MPAVWLSLKK SLQCRSEPAE VHDPSKKVSS GTRKKTATVR SGCSRSIANL RDVVINGSRR 60 YNNGETPYLQ SPRSIGSNEL LNPITHEVVL NNSTCELKIT SYSFQDGGGG GAAGGGGGGG 120 WPFVQCTLKP GTPGPGGQYR KPGGGGVGSP TVKGSTGGLS RRVGAGFSGI VPRPKASNGG 180 PEFYGFKELS CPKCGEHFSK WDAVESHHLS KHAVTQLVEG DSSRSIVEMI CRTSWASSKP 240 DKNNNTGNNN GMERILKVHN MQKTLARFEE YRETVKIKAS KLAKKHARCL ADGNELLRFH 300 GTTVECSLGK NGSSSLCNSE KCQVCQILRH GFRVKKGGVG VFTASTSRRA VEAIEVKGGM 360 KRALIVCRVI AGRVHKPVEN NLQELSGFDS LAGKFGLHSS VEELFLLNPK ALLPCFVVIC 420 RA

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MPAVWLSLKK SLQCRSEPAE VHDPSKKVSS GTRKKTATVR SGCSRSIANL RDVVINGSRR  60
YNNGETPYLQ SPRSIGSNEL LNPITHEVVL NNSTCELKIT SYSFQDGGGG GAAGGGGGGG  120
WPFVQCTLKP GTPGPGGQYR KPGGGGVGSP TVKGSTGGLS RRVGAGFSGI VPRPKASNGG  180
PEFYGFKELS CPKCGEHFSK WDAVESHHLS KHAVTQLVEG DSSRSIVEMI CRTSWASSKP  240
DKNNNTGNNN GMERILKVHN MQKTLARFEE YRETVKIKAS KLAKKHARCL ADGNELLRFH  300
GTTVECSLGK NGSSSLCNSE KCQVCQILRH GFRVKKGGVG VFTASTSRRA VEAIEVKGGM  360
KRALIVCRVI AGRVHKPVEN NLQELSGFDS LAGKFGLHSS VEELFLLNPK ALLPCFVVIC  420
RA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019168786.1	0.0	PREDICTED: uncharacterized protein LOC109164699
TrEMBL	A0A1J6KEA0	0.0	A0A1J6KEA0_NICAT; Uncharacterized protein
STRING	XP_009588899.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-130	C2H2 family protein