PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000746.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 203aa MW: 22866.3 Da PI: 4.3455 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.6e-08 | 3 | 26 | 22 | 47 |
T-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47 + W+ Ia++++ gRt++++k++w++ Itr_sc000746.1_g00009.1 3 E-WAQIAAKLP-GRTDNEIKNFWNSC 26 4.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 9.66E-6 | 1 | 24 | No hit | No description |
PROSITE profile | PS51294 | 16.382 | 1 | 31 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-7 | 2 | 38 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-12 | 3 | 45 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.6E-6 | 3 | 26 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MGEWAQIAAK LPGRTDNEIK NFWNSCLKKK LIKRGIDPNT HKPIINTSSD APKSFAAEDH 60 NNINNSSSTI PKPTLPWPLN LSELEQPQAF DPLFLYDFQQ SLNNNNSEQY FHGGFSTLPS 120 LANFENMSMV NNGPITFPNW ETCDNNINTD SVSAHQFPFS AKIEDVEGCS DYDFSEYSLP 180 ALPQDLSGEN NLEFFMSCTK FNL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019185117.1 | 6e-80 | PREDICTED: transcription factor MYB86-like | ||||
TrEMBL | A0A2G3C9S5 | 4e-24 | A0A2G3C9S5_CAPCH; Transcription factor MYB32 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 3e-22 | myb domain protein 86 |