PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000745.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 692aa    MW: 76025 Da    PI: 7.1399
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000745.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23122223199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+
  Itr_sc000745.1_g00001.1 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDS 205
                              89****************************996555555..89******************************************* PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              +vF   + +++ l+v+++r+
  Itr_sc000745.1_g00001.1 206 IVFL--RAENGDLCVGIRRA 223
                              ****..4488999****997 PP
2Auxin_resp114.68.8e-38288371183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                              aa+ a ++++Fev+Y+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  Itr_sc000745.1_g00001.1 288 AANLAVNGQPFEVIYYPRASTPEFCVKASLVKTALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 371
                              789999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-37115226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-29117225IPR015300DNA-binding pseudobarrel domain
CDDcd100175.31E-21121222No hitNo description
SMARTSM010191.7E-21122224IPR003340B3 DNA binding domain
PfamPF023628.7E-22122223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112122224IPR003340B3 DNA binding domain
PfamPF065075.6E-33288371IPR010525Auxin response factor
PROSITE profilePS5174519.407606689IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MITFMDSKDT VRETEKCLDS QLWHACAGSM VQMPPVNSKV FYFPQGHAEH ASSNVDFRNS  60
SRIPSYIPCR VSGIRYMADP ETDEVFSKIR LVPISRNEVE FEDDGGVGVN GGDNSPDKPT  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG  180
TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PETSSGWNPV  240
GGNCMVPYGG FSAFLREDEN KLMRNGNGRN NGNLMGSGKV KAESVVEAAN LAVNGQPFEV  300
IYYPRASTPE FCVKASLVKT ALQIRWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPI  360
RWPDSPWRLL QVTWDEPDLL QNVKRVSPWL VELVSNMPTM HISPFSPPRK KFRLPQHPDF  420
PFDGQIPMPA FSRNHLLGPN GPFGCLPDNT PPAGMQGARH AQYGLSLSDL HLNKLQSGFF  480
PLGFPPLDHA AMPSRPTNSL AIHKPCSTEE ISCLLTMGNS AETLKKSDSG KAPLVLFGKP  540
ILTEQQISLS CSGDTVSPVG TGNSSSDGNA HKLGNTSDSS GPNLNLHGTL ERSPRDGSQP  600
EPNLETGHCK VFMESEDVGR TLDLSLLESY EKLNKKLADM FGIENSEVLN HVLYRDVTGA  660
VKHLGDEPFS EFMKSARRLK ILMDSSSNNV GV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-80839241388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191433.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G2VZR80.0A0A2G2VZR8_CAPBA; Auxin response factor
TrEMBLA0A2G3BJ950.0A0A2G3BJ95_CAPCH; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]