PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000735.1_g00014.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 371aa MW: 40361.2 Da PI: 6.8353

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000735.1_g00014.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.9	6.3e-06	34	75	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + C+ ++ + fC+ + +++C +C + H H++ Itr_sc000735.1_g00014.1 34 KPCDYCKIAVALVFCRVDAVFMCLECDAKVHATnklgskHER 75 57****99*****************9965667777765 PP
2	zf-B_box	25.6	2.5e-08	76	121	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ Itr_sc000735.1_g00014.1 76 VWVCEVCEHAPAAVTCKADAAALCVTCDRDIHSAnplaqrHERVPV 121 689*****************************66899999999986 PP
3	CCT	69.7	7.4e-24	297	340	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Itr_sc000735.1_g00014.1 297 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 340 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.8E-8	31	78	IPR000315	B-box-type zinc finger
CDD	cd00021	6.27E-7	35	78	No hit	No description
PROSITE profile	PS50119	8.674	36	78	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.822	74	121	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.9E-6	75	121	IPR000315	B-box-type zinc finger
CDD	cd00021	2.36E-9	77	121	No hit	No description
SMART	SM00336	3.5E-10	79	121	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.787	297	339	IPR010402	CCT domain
Pfam	PF06203	5.7E-18	297	339	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MVIGNCGGGG GGSGDSVINS RCLSGGWGAA AVAKPCDYCK IAVALVFCRV DAVFMCLECD 60 AKVHATNKLG SKHERVWVCE VCEHAPAAVT CKADAAALCV TCDRDIHSAN PLAQRHERVP 120 VTPFYDTAES VVKSTTAALL VPINDSNPPN FAHENFASDP WNSSASITSK LPENAPAGMK 180 SAEFSLFDSD NFLDFEYPVS WESNSQNQYN SDRVVPIQTI KTSAPIIPQE KHFEIDFTRS 240 NLTSYNSGFT KPSLSVSSSL DVGVVPDGSS VSEISYRNIG AGSVDSRGGS QWNGMDREAR 300 VLRYREKRKN RKFEKTIRYA SRKAYAETRP RIKGRFAKRT EVESESDIDT LFSSADSAAD 360 VGRFSVVPLI W

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MVIGNCGGGG GGSGDSVINS RCLSGGWGAA AVAKPCDYCK IAVALVFCRV DAVFMCLECD  60
AKVHATNKLG SKHERVWVCE VCEHAPAAVT CKADAAALCV TCDRDIHSAN PLAQRHERVP  120
VTPFYDTAES VVKSTTAALL VPINDSNPPN FAHENFASDP WNSSASITSK LPENAPAGMK  180
SAEFSLFDSD NFLDFEYPVS WESNSQNQYN SDRVVPIQTI KTSAPIIPQE KHFEIDFTRS  240
NLTSYNSGFT KPSLSVSSSL DVGVVPDGSS VSEISYRNIG AGSVDSRGGS QWNGMDREAR  300
VLRYREKRKN RKFEKTIRYA SRKAYAETRP RIKGRFAKRT EVESESDIDT LFSSADSAAD  360
VGRFSVVPLI W

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019160356.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 5-like isoform X3
Swissprot	Q9FHH8	1e-100	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A068U441	1e-139	A0A068U441_COFCA; Uncharacterized protein
STRING	XP_009608073.1	1e-130	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1035	23	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	4e-89	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]