PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000730.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 435aa    MW: 47466.1 Da    PI: 9.2452
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000730.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05628123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F r  nL+ H r H
  Itr_sc000730.1_g00003.1  6 FVCEICNKGFQRDQNLQLHRRGH 28
                             89*******************88 PP
2zf-C2H211.50.0009583105123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k +  +s+ k H + +
  Itr_sc000730.1_g00003.1  83 WKCDKCSKKYAVQSDWKAHSKIC 105
                              58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.65E-7528No hitNo description
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
PfamPF121716.7E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355854878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-571104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.65E-778103No hitNo description
SMARTSM0035515083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSKQ EVVKKKVYIC PEKSCVHHDP  60
SRALGDLTGI KKHYSRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR  120
KDSFITHRAF CDALAEESAR FTSLPAPNLN FRHELLNAGL STSALQHPQF GSHVFRPPPH  180
HDLMGGGGFD PASQLTLDGQ KPRLPLWLDA ANSDHHLSNA NGDFLVPPPP PASTAAALPQ  240
ELLMWSGGGG SASSSTAVLK EEEHKGNIIS EAMNSLYYNS PEAPPPAAHM SATALLQKAA  300
QMGSTRSGNS GIFGNGFGLT GSTLSTLDSY NNNARNKVHH HHQNILGNGN STGLMSVNDQ  360
MNNNNNNNNG LLLMMQNKGK QVSLGGNEGV DGSLTRDFLG VGGSHDQNRP FLQQNELANF  420
ASSASTVGLN QYGNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3779148372Zinc finger protein JACKDAW
5b3h_F4e-3779148372Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177894.10.0PREDICTED: protein indeterminate-domain 9-like
TrEMBLA0A1J6KXM91e-171A0A1J6KXM9_NICAT; Protein indeterminate-domain 9
STRINGXP_009789501.11e-170(Nicotiana sylvestris)
STRINGXP_009620251.11e-170(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.13e-88C2H2-like zinc finger protein