PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000728.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NF-YC | ||||||||
Protein Properties | Length: 259aa MW: 28795.6 Da PI: 5.9293 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 175.9 | 4e-55 | 82 | 185 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 ql+ fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+ Itr_sc000728.1_g00006.1 82 QLQGFWANQyqeIEQVSDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAI 167 799*****99999************************************************************************* PP NF-YC 84 trtdifdflvdivprdel 101 trtdifdflvdivpr++l Itr_sc000728.1_g00006.1 168 TRTDIFDFLVDIVPREDL 185 ***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.37E-34 | 76 | 176 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-22 | 104 | 167 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.8E-38 | 105 | 182 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDQHGNGQPP PGMGVVTTSA SMPYGAPSFQ ANQMTGPPLA TSVGPIQSPQ NVGLPASSSQ 60 MAPHQLAYQH IHQQQQQQLQ QQLQGFWANQ YQEIEQVSDF KNHSLPLARI KKIMKADEDV 120 RMISAEAPVV FARACEMFIL ELTLRAWNHT EENKRRTLQK NDIAAAITRT DIFDFLVDIV 180 PREDLKDEVL ASIPRGTLPV GGPAELPYYY MQAQSAPQVG TSGMYMGKPV DQAPYGQQPR 240 PYMAQPMWPQ QQQQPPSDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-61 | 90 | 182 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 160 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019198298.1 | 1e-166 | PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_019198299.1 | 1e-166 | PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_019198300.1 | 1e-166 | PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Swissprot | Q8L4B2 | 5e-89 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A484K8N9 | 1e-149 | A0A484K8N9_9ASTE; Uncharacterized protein | ||||
STRING | XP_009590081.1 | 1e-135 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3422 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 5e-84 | nuclear factor Y, subunit C9 |